Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   K9N54_RS15345 Genome accession   NZ_CP083361
Coordinates   3189275..3189868 (-) Length   197 a.a.
NCBI ID   WP_025793367.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20-082E4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3184275..3194868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N54_RS15325 (K9N54_15210) aroB 3185151..3186251 (-) 1101 WP_005480443.1 3-dehydroquinate synthase -
  K9N54_RS15330 (K9N54_15215) aroK 3186283..3186801 (-) 519 WP_005381319.1 shikimate kinase AroK -
  K9N54_RS15335 (K9N54_15220) pilQ 3186990..3188738 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  K9N54_RS15340 (K9N54_15225) pilP 3188770..3189285 (-) 516 WP_023585576.1 pilus assembly protein PilP Machinery gene
  K9N54_RS15345 (K9N54_15230) pilO 3189275..3189868 (-) 594 WP_025793367.1 type 4a pilus biogenesis protein PilO Machinery gene
  K9N54_RS15350 (K9N54_15235) pilN 3189861..3190439 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  K9N54_RS15355 (K9N54_15240) pilM 3190423..3191439 (-) 1017 WP_025793368.1 type IV pilus biogenesis protein PilM Machinery gene
  K9N54_RS15360 (K9N54_15245) - 3191582..3194152 (+) 2571 WP_005480476.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23103.69 Da        Isoelectric Point: 4.8225

>NTDB_id=605388 K9N54_RS15345 WP_025793367.1 3189275..3189868(-) (pilO) [Vibrio parahaemolyticus strain 20-082E4]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
IFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=605388 K9N54_RS15345 WP_025793367.1 3189275..3189868(-) (pilO) [Vibrio parahaemolyticus strain 20-082E4]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ATCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

93.684

96.447

0.904
  pilO Vibrio cholerae strain A1552

72.589

100

0.726