Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   K9N54_RS15340 Genome accession   NZ_CP083361
Coordinates   3188770..3189285 (-) Length   171 a.a.
NCBI ID   WP_023585576.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20-082E4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3183770..3194285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N54_RS15325 (K9N54_15210) aroB 3185151..3186251 (-) 1101 WP_005480443.1 3-dehydroquinate synthase -
  K9N54_RS15330 (K9N54_15215) aroK 3186283..3186801 (-) 519 WP_005381319.1 shikimate kinase AroK -
  K9N54_RS15335 (K9N54_15220) pilQ 3186990..3188738 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  K9N54_RS15340 (K9N54_15225) pilP 3188770..3189285 (-) 516 WP_023585576.1 pilus assembly protein PilP Machinery gene
  K9N54_RS15345 (K9N54_15230) pilO 3189275..3189868 (-) 594 WP_025793367.1 type 4a pilus biogenesis protein PilO Machinery gene
  K9N54_RS15350 (K9N54_15235) pilN 3189861..3190439 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  K9N54_RS15355 (K9N54_15240) pilM 3190423..3191439 (-) 1017 WP_025793368.1 type IV pilus biogenesis protein PilM Machinery gene
  K9N54_RS15360 (K9N54_15245) - 3191582..3194152 (+) 2571 WP_005480476.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18931.11 Da        Isoelectric Point: 10.4654

>NTDB_id=605387 K9N54_RS15340 WP_023585576.1 3188770..3189285(-) (pilP) [Vibrio parahaemolyticus strain 20-082E4]
MRNKSLLMVLVSALLVGCQANDESLTDFIRGVESQARRDVETLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=605387 K9N54_RS15340 WP_023585576.1 3188770..3189285(-) (pilP) [Vibrio parahaemolyticus strain 20-082E4]
ATGAGAAATAAATCTTTGCTGATGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGACGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGGATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.626

100

0.836
  pilP Vibrio cholerae strain A1552

57.558

100

0.579