Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NLY76_RS00365 Genome accession   NZ_CP100430
Coordinates   63194..63784 (+) Length   196 a.a.
NCBI ID   WP_044684330.1    Uniprot ID   -
Organism   Streptococcus suis strain LSS42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 58194..68784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS00355 (NLY76_00355) - 59577..61100 (+) 1524 WP_044769932.1 quinol oxidase -
  NLY76_RS00360 (NLY76_00360) hexB 61218..63155 (+) 1938 WP_044684329.1 DNA mismatch repair endonuclease MutL Machinery gene
  NLY76_RS00365 (NLY76_00365) ruvA 63194..63784 (+) 591 WP_044684330.1 Holliday junction branch migration protein RuvA Machinery gene
  NLY76_RS00370 (NLY76_00370) - 64219..64788 (+) 570 WP_012774893.1 DNA-3-methyladenine glycosylase I -
  NLY76_RS00375 (NLY76_00375) cinA 64825..66006 (+) 1182 WP_044684331.1 competence/damage-inducible protein A Machinery gene
  NLY76_RS00380 (NLY76_00380) recA 66058..67209 (+) 1152 WP_024416946.1 recombinase RecA Machinery gene
  NLY76_RS00385 (NLY76_00385) spx 67445..67843 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  NLY76_RS00390 (NLY76_00390) - 67943..68209 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  NLY76_RS00395 (NLY76_00395) ruvX 68209..68628 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21708.09 Da        Isoelectric Point: 5.0800

>NTDB_id=604965 NLY76_RS00365 WP_044684330.1 63194..63784(+) (ruvA) [Streptococcus suis strain LSS42]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQPVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=604965 NLY76_RS00365 WP_044684330.1 63194..63784(+) (ruvA) [Streptococcus suis strain LSS42]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATACATTGTGGTAGAAACGCAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACGGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCGAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACCAGTAGCACCATCCAGTGAAAATATCGCCCTCGAAGAAGCCATGGAAGCCATGGAA
GCTCTTGGCTACCGACCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAACGACACCGCGGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

76.142

100

0.765
  ruvA Streptococcus pneumoniae D39

76.142

100

0.765
  ruvA Streptococcus pneumoniae TIGR4

76.142

100

0.765
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408