Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   NKZ65_RS02210 Genome accession   NZ_CP100332
Coordinates   428857..429522 (+) Length   221 a.a.
NCBI ID   WP_004194119.1    Uniprot ID   A0A0H3MTI6
Organism   Streptococcus suis strain STC84     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423857..434522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ65_RS02185 (NKZ65_02185) - 424068..425468 (+) 1401 WP_024394814.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  NKZ65_RS02190 (NKZ65_02190) - 425470..425841 (+) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  NKZ65_RS02195 (NKZ65_02195) cysK 425867..426793 (-) 927 WP_012774985.1 cysteine synthase A -
  NKZ65_RS02200 (NKZ65_02200) - 426883..427515 (-) 633 WP_015646510.1 YigZ family protein -
  NKZ65_RS02205 (NKZ65_02205) comFA/cflA 427572..428864 (+) 1293 WP_024415030.1 DEAD/DEAH box helicase Machinery gene
  NKZ65_RS02210 (NKZ65_02210) comFC/cflB 428857..429522 (+) 666 WP_004194119.1 ComF family protein Machinery gene
  NKZ65_RS02215 (NKZ65_02215) raiA 429599..430141 (+) 543 WP_004194117.1 ribosome-associated translation inhibitor RaiA -
  NKZ65_RS02220 (NKZ65_02220) - 430184..431137 (-) 954 WP_024376800.1 IS30 family transposase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25748.55 Da        Isoelectric Point: 8.2726

>NTDB_id=604305 NKZ65_RS02210 WP_004194119.1 428857..429522(+) (comFC/cflB) [Streptococcus suis strain STC84]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=604305 NKZ65_RS02210 WP_004194119.1 428857..429522(+) (comFC/cflB) [Streptococcus suis strain STC84]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGGATGCTACAAATATTCCTTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MTI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484