Detailed information NTG0604274

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: NKZ65_RS00335
• Genome accession: NZ_CP100332
• Coordinates: 55217..56218 (+)
• Length: 333 a.a.
• NCBI ID: WP_004195448.1
• Uniprot ID: A0A0H3MST2
• Organism: Streptococcus suis strain STC84
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 50217..61218

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NKZ65_RS00305 (NKZ65_00305)	-	50482..51306 (+)	825	WP_002935311.1	ABC transporter ATP-binding protein	-
NKZ65_RS00310 (NKZ65_00310)	-	51299..52042 (+)	744	WP_023369007.1	ABC transporter permease	-
NKZ65_RS00315 (NKZ65_00315)	-	52364..53092 (+)	729	WP_024384068.1	amino acid transporter	-
NKZ65_RS00320 (NKZ65_00320)	-	53102..53680 (+)	579	WP_023369011.1	CPBP family intramembrane glutamic endopeptidase	-
NKZ65_RS00325 (NKZ65_00325)	-	53695..54123 (+)	429	WP_023369013.1	Msa family membrane protein	-
NKZ65_RS00330 (NKZ65_00330)	-	54116..54880 (+)	765	Protein_45	ABC transporter ATP-binding protein	-
NKZ65_RS00335 (NKZ65_00335)	ruvB	55217..56218 (+)	1002	WP_004195448.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
NKZ65_RS00340 (NKZ65_00340)	-	56218..56964 (+)	747	WP_011921670.1	GNAT family N-acetyltransferase	-
NKZ65_RS00345 (NKZ65_00345)	-	56966..57601 (+)	636	WP_023369015.1	HAD-IA family hydrolase	-
NKZ65_RS00350 (NKZ65_00350)	comR	57848..58747 (+)	900	WP_012774888.1	helix-turn-helix domain-containing protein	Regulator
NKZ65_RS00355 (NKZ65_00355)	-	59383..60321 (-)	939	WP_024402114.1	IS4 family transposase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37613.12 Da
• Isoelectric Point: 4.4673

>NTDB_id=604274 NKZ65_RS00335 WP_004195448.1 55217..56218(+) (ruvB) [Streptococcus suis strain STC84]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=604274 NKZ65_RS00335 WP_004195448.1 55217..56218(+) (ruvB) [Streptococcus suis strain STC84]
ATGACAAATCGAATTTTAGACATGGAACAAATGCAGGACGAGGAGTACGTTGAGCGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGATAAGGTCAAGGACCAGCTGAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTTGGACCTCCAGGTTTGGGGAAGACCACCATGGCCTTTGTCATCGCCAACGAACTGGGCGTTAAT
ATCAAGCAGACTAGCGGTCCTGTTATTGAAAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAGATTCTCTACTCAGCCATGGAAGACTTCTACATCG
ACATCATGATTGGGGCTGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTGCCGCCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCTCTGCGGGCCCGTTTTGGGATTACCGGTCACATGGAATACTACGAATTGGCTGATTT
GACGGAGATTGTCGAGCGGACTGCGGATATCTTTGACATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGTCTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGCGACGGCCTGATT
GACGATAGCATTACGGACAAGGCTCTAACCATGCTGGACGTGGACCGAGAAGGGCTGGACTACGTGGACCAGAAGATTCT
CCGTACCATGATTGAGATGTACGGCGGCGGTCCCGTCGGTCTCAACACCCTATCGGTCAATATCGCTGAAGAGCGTGAAA
CGGTGGAGGACATGTATGAGCCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACACGGACGGGGCGGGTTGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: A0A0H3MST2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474