Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   K9C16_RS01935 Genome accession   NZ_CP082952
Coordinates   411463..412203 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain Cl300     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406463..417203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9C16_RS01920 (K9C16_01925) ponA 407050..409605 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  K9C16_RS01925 (K9C16_01930) pilM 409767..410825 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  K9C16_RS01930 (K9C16_01935) pilN 410825..411466 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  K9C16_RS01935 (K9C16_01940) pilO 411463..412203 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  K9C16_RS01940 (K9C16_01945) pilP 412214..412741 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  K9C16_RS01945 (K9C16_01950) pilQ 412809..414974 (+) 2166 WP_029424115.1 type IV pilus secretin PilQ family protein Machinery gene
  K9C16_RS01950 (K9C16_01955) aroK 414986..415555 (+) 570 WP_000643712.1 shikimate kinase AroK -
  K9C16_RS01955 (K9C16_01960) aroB 415584..416666 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=603862 K9C16_RS01935 WP_000076101.1 411463..412203(+) (pilO) [Acinetobacter baumannii strain Cl300]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=603862 K9C16_RS01935 WP_000076101.1 411463..412203(+) (pilO) [Acinetobacter baumannii strain Cl300]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683