Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   K9C16_RS01930 Genome accession   NZ_CP082952
Coordinates   410825..411466 (+) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain Cl300     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 405825..416466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9C16_RS01910 (K9C16_01915) - 405873..406205 (+) 333 WP_000169602.1 hypothetical protein -
  K9C16_RS01915 (K9C16_01920) - 406208..407032 (+) 825 WP_086221410.1 putative RNA methyltransferase -
  K9C16_RS01920 (K9C16_01925) ponA 407050..409605 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  K9C16_RS01925 (K9C16_01930) pilM 409767..410825 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  K9C16_RS01930 (K9C16_01935) pilN 410825..411466 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  K9C16_RS01935 (K9C16_01940) pilO 411463..412203 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  K9C16_RS01940 (K9C16_01945) pilP 412214..412741 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  K9C16_RS01945 (K9C16_01950) pilQ 412809..414974 (+) 2166 WP_029424115.1 type IV pilus secretin PilQ family protein Machinery gene
  K9C16_RS01950 (K9C16_01955) aroK 414986..415555 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=603861 K9C16_RS01930 WP_000201227.1 410825..411466(+) (pilN) [Acinetobacter baumannii strain Cl300]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=603861 K9C16_RS01930 WP_000201227.1 410825..411466(+) (pilN) [Acinetobacter baumannii strain Cl300]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709