Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   K8351_RS06470 Genome accession   NZ_CP082947
Coordinates   1203286..1204245 (-) Length   319 a.a.
NCBI ID   WP_032685565.1    Uniprot ID   -
Organism   Campylobacter coli strain C203016     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1198286..1209245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8351_RS06440 (K8351_06405) - 1199251..1199451 (+) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -
  K8351_RS06445 (K8351_06410) - 1199481..1199780 (-) 300 WP_002777238.1 cytochrome c -
  K8351_RS06450 (K8351_06415) - 1199857..1200420 (+) 564 WP_002820231.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  K8351_RS06455 (K8351_06420) rfaD 1200417..1201370 (+) 954 WP_038853884.1 ADP-glyceromanno-heptose 6-epimerase -
  K8351_RS06460 (K8351_06425) rfaE1 1201363..1202748 (+) 1386 WP_002831599.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  K8351_RS06465 (K8351_06430) gmhA 1202745..1203305 (+) 561 WP_052783332.1 D-sedoheptulose 7-phosphate isomerase -
  K8351_RS06470 (K8351_06435) waaF 1203286..1204245 (-) 960 WP_032685565.1 lipopolysaccharide heptosyltransferase II Regulator
  K8351_RS06475 (K8351_06440) - 1204304..1205071 (+) 768 WP_223375556.1 glycosyltransferase family 2 protein -
  K8351_RS06480 (K8351_06445) - 1205219..1206088 (+) 870 WP_223375557.1 polysaccharide pyruvyl transferase family protein -
  K8351_RS09105 - 1205980..1206306 (-) 327 WP_265324592.1 DUF2920 family protein -
  K8351_RS09110 (K8351_06450) - 1206314..1206886 (-) 573 WP_250406664.1 DUF2920 family protein -
  K8351_RS06490 (K8351_06455) pstB 1206947..1207687 (-) 741 WP_002776307.1 phosphate ABC transporter ATP-binding protein PstB -
  K8351_RS06495 (K8351_06460) pstA 1207684..1208772 (-) 1089 WP_002797470.1 phosphate ABC transporter permease PstA -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36723.20 Da        Isoelectric Point: 10.3041

>NTDB_id=603800 K8351_RS06470 WP_032685565.1 1203286..1204245(-) (waaF) [Campylobacter coli strain C203016]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKTIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLNTKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=603800 K8351_RS06470 WP_032685565.1 1203286..1204245(-) (waaF) [Campylobacter coli strain C203016]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAACCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCCAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAATACAAAAGCTCATTTTAAGGACTTAA
AACTTCCATTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.357

100

0.944