Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K8U54_RS06530 Genome accession   NZ_CP082928
Coordinates   1441497..1442834 (+) Length   445 a.a.
NCBI ID   WP_070884486.1    Uniprot ID   A0A1I3I0Q8
Organism   Pseudomonas fulva strain ZJU1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1436497..1447834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8U54_RS06505 (K8U54_06485) pgeF 1436665..1437405 (-) 741 WP_249909377.1 peptidoglycan editing factor PgeF -
  K8U54_RS06510 (K8U54_06490) rluD 1437402..1438376 (-) 975 WP_249909378.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K8U54_RS06515 (K8U54_06495) - 1438524..1439516 (+) 993 WP_249909379.1 outer membrane protein assembly factor BamD -
  K8U54_RS06520 (K8U54_06500) - 1439661..1439906 (+) 246 WP_249909380.1 PP0621 family protein -
  K8U54_RS06525 (K8U54_06505) pilS 1439896..1441488 (+) 1593 WP_249909381.1 ATP-binding protein Regulator
  K8U54_RS06530 (K8U54_06510) pilR 1441497..1442834 (+) 1338 WP_070884486.1 sigma-54 dependent transcriptional regulator Regulator
  K8U54_RS06535 (K8U54_06515) thiO 1442896..1443993 (-) 1098 WP_249909382.1 glycine oxidase ThiO -
  K8U54_RS06540 (K8U54_06520) - 1444101..1444592 (+) 492 WP_249909383.1 GspH/FimT family pseudopilin -
  K8U54_RS06545 (K8U54_06525) - 1444767..1445213 (+) 447 WP_249909384.1 GspH/FimT family pseudopilin -
  K8U54_RS06550 (K8U54_06530) pilV 1445229..1445795 (+) 567 WP_074881526.1 type IV pilus modification protein PilV -
  K8U54_RS06555 (K8U54_06535) - 1445792..1446640 (+) 849 WP_249909385.1 PilW family protein -
  K8U54_RS06560 (K8U54_06540) - 1446637..1447281 (+) 645 WP_249909386.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49514.88 Da        Isoelectric Point: 6.2854

>NTDB_id=603655 K8U54_RS06530 WP_070884486.1 1441497..1442834(+) (pilR) [Pseudomonas fulva strain ZJU1]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAKEPFDLCLTDMRLPDGSGLDIVQHIQQRHPQTPVAM
ITAFGSVDTAINALKAGAFDFLTKPVDLGRLRELVNTALRLHAAEEGEAPGSSRLLGESPPMRALRGQIQKLARSQAPVY
ISGESGSGKELVARLIHEQGPRRERAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGSLFLDEVADLP
LTMQVKLLRAIQEKAIRAVGGQQEVVVDTRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADVM
LKRLNEGIGLPPVKLDGPALEKLKSYRFPGNVRELENMLERAYTLCEGDVICANDLRLADAAPAGENGDASLAQIDNIED
YLEDVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=603655 K8U54_RS06530 WP_070884486.1 1441497..1442834(+) (pilR) [Pseudomonas fulva strain ZJU1]
ATGAATCGCCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGCGAACTGCTGGAGATCACCCTCGGGCGCATGAA
ACTCGACACCCGTAGCGCCCGCAACGTCAAGGAAGCGCGCGAGTGGCTGGCCAAGGAGCCGTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCAGACGGCAGCGGCCTGGATATCGTGCAGCATATCCAGCAGCGCCATCCGCAAACGCCGGTGGCGATG
ATCACCGCGTTCGGCAGCGTCGACACGGCGATCAACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAACCGGTCGA
CCTGGGCCGCCTGCGCGAACTGGTGAACACTGCCCTGCGCCTGCATGCCGCCGAGGAAGGCGAAGCGCCGGGCAGCAGCC
GCCTGCTGGGCGAGTCGCCACCGATGCGCGCGCTGCGCGGGCAGATCCAGAAGCTCGCGCGCAGCCAGGCGCCGGTGTAC
ATCAGCGGGGAGTCGGGCAGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGCCCGCGCCGCGAGCGTGCCTT
CGTGCCGGTCAACTGCGGCGCGATTCCCTCGGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCG
GTGCCGTCGAAGACAAACAGGGCCTGTTCCAGGCCGCCAATGGCGGCAGCCTGTTTCTCGACGAGGTGGCCGACCTGCCG
CTGACCATGCAGGTCAAGCTGCTGCGCGCTATCCAGGAAAAGGCCATACGCGCAGTCGGCGGTCAGCAGGAAGTGGTGGT
CGACACCCGCATCCTCTGCGCCACCCACAAGGACCTGGCCGCCGAAGTGGCGGCCGGGCGCTTCCGCCAGGATCTCTACT
ACCGGCTCAACGTTATCGAACTGCGCGTACCGCCGCTACGCGAACGCCGCGAGGACATCCCCCTGCTGGCCGACGTAATG
CTCAAGCGCCTCAACGAAGGCATCGGCCTGCCACCGGTCAAGCTCGACGGCCCTGCCCTGGAAAAGCTCAAGAGCTACCG
CTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGGCGACGTGATCTGCGCAA
ACGACCTGCGCCTAGCGGACGCCGCGCCGGCTGGCGAGAACGGCGACGCGAGCCTGGCGCAGATCGACAACATCGAGGAT
TACCTGGAAGACGTCGAACGCAAACTGATCATGCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCAGCAGCGCAGCG
CCTGGGCCTGAGCTTCCGTTCGATGCGCTATCGCCTCAAGAAACTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I3I0Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.292

100

0.863
  pilR Acinetobacter baumannii strain A118

50.109

100

0.517
  luxO Vibrio cholerae strain A1552

36.996

100

0.371