Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   K8U54_RS06525 Genome accession   NZ_CP082928
Coordinates   1439896..1441488 (+) Length   530 a.a.
NCBI ID   WP_249909381.1    Uniprot ID   -
Organism   Pseudomonas fulva strain ZJU1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1434896..1446488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8U54_RS06505 (K8U54_06485) pgeF 1436665..1437405 (-) 741 WP_249909377.1 peptidoglycan editing factor PgeF -
  K8U54_RS06510 (K8U54_06490) rluD 1437402..1438376 (-) 975 WP_249909378.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K8U54_RS06515 (K8U54_06495) - 1438524..1439516 (+) 993 WP_249909379.1 outer membrane protein assembly factor BamD -
  K8U54_RS06520 (K8U54_06500) - 1439661..1439906 (+) 246 WP_249909380.1 PP0621 family protein -
  K8U54_RS06525 (K8U54_06505) pilS 1439896..1441488 (+) 1593 WP_249909381.1 ATP-binding protein Regulator
  K8U54_RS06530 (K8U54_06510) pilR 1441497..1442834 (+) 1338 WP_070884486.1 sigma-54 dependent transcriptional regulator Regulator
  K8U54_RS06535 (K8U54_06515) thiO 1442896..1443993 (-) 1098 WP_249909382.1 glycine oxidase ThiO -
  K8U54_RS06540 (K8U54_06520) - 1444101..1444592 (+) 492 WP_249909383.1 GspH/FimT family pseudopilin -
  K8U54_RS06545 (K8U54_06525) - 1444767..1445213 (+) 447 WP_249909384.1 GspH/FimT family pseudopilin -
  K8U54_RS06550 (K8U54_06530) pilV 1445229..1445795 (+) 567 WP_074881526.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58526.82 Da        Isoelectric Point: 9.0234

>NTDB_id=603654 K8U54_RS06525 WP_249909381.1 1439896..1441488(+) (pilS) [Pseudomonas fulva strain ZJU1]
MPNSALAVRGPQGHRIFRLYHLYRLVIGVVLVLLVSANLDSELLELAHVPLFRGASWVYLILNILIALTLHTPNRLLPVF
AVALGDVMLLSALFYAGGGTPSGIGNLLIVSVAIANILLRGRFGVLIAAAAAIGMIYLTFYLSLNHPQASSQYVQVGALG
ALCFAAALFVQGLTRRLQVSESLAEQRAADVADLETLNNLILQRMRTGILVVDEQRRVLLANQAALGLLGQQNLAGKILD
PHCTELVKRLQHWQENSSLRPASLQTLSDGPTLQPSFIPLQRGGQRHILILLDDISQIAQQAQQLKLVALGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLHGPDQRLAQIIQDHSRRMNLIIENVLQLSRRRQAEPQLLDLKYWLHRFAAEFRSTAPAS
KVLHLAIEGSSIQTRMDPNQLNQVITNLVQNGLRHSAKLNPQGQVWLKLFRDPRNDLPVLEVLDDGEGVPADQLHHIFEP
FYTTENKGTGLGLYISRELCESNQAHLHYQPREGGGACFRITFAHPRKMS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=603654 K8U54_RS06525 WP_249909381.1 1439896..1441488(+) (pilS) [Pseudomonas fulva strain ZJU1]
GTGCCCAATAGCGCCCTGGCCGTACGGGGCCCCCAGGGGCATCGTATCTTCCGGCTGTACCACCTCTACCGCCTGGTCAT
CGGCGTGGTGCTGGTGCTGCTGGTGTCCGCCAATCTGGACTCGGAGCTGCTGGAGCTGGCCCACGTGCCGCTGTTTCGCG
GCGCCAGTTGGGTCTACCTGATCCTCAACATCCTGATCGCGCTGACGCTCCACACACCCAACCGCCTGCTGCCGGTGTTC
GCCGTGGCGCTGGGCGACGTGATGCTGCTCTCGGCGCTGTTCTACGCCGGGGGCGGTACACCAAGCGGCATCGGCAACCT
GCTGATCGTCTCCGTGGCGATCGCCAACATCCTGTTGCGCGGTCGCTTCGGCGTCCTGATCGCCGCCGCCGCCGCGATCG
GCATGATCTACCTGACCTTCTACCTGAGCCTCAACCACCCCCAGGCCAGCAGTCAGTACGTGCAGGTCGGTGCACTGGGC
GCGCTGTGCTTCGCTGCGGCGTTGTTCGTACAGGGGCTGACCCGGCGCCTGCAGGTCAGCGAGAGCCTGGCCGAACAGCG
CGCCGCCGACGTAGCGGACCTGGAAACCCTCAACAACCTGATCCTGCAGCGCATGCGCACCGGCATTCTGGTGGTGGACG
AACAGCGCCGCGTGCTGCTGGCCAACCAGGCGGCGCTCGGCTTGCTTGGCCAGCAGAACCTGGCGGGCAAGATTCTCGAC
CCGCACTGCACCGAGCTGGTCAAGCGCCTGCAGCACTGGCAGGAAAACAGCAGCCTGCGCCCGGCCAGCCTGCAGACGCT
CAGCGACGGCCCGACCCTGCAGCCCAGCTTCATCCCCCTGCAGCGCGGCGGCCAGCGGCATATCCTGATCCTGCTCGACG
ACATCTCGCAGATCGCCCAGCAGGCCCAGCAACTCAAGCTGGTGGCCCTCGGCCGGCTGACCGCCGGCATCGCCCACGAG
ATTCGCAATCCGCTGGGCGCCATCAGCCATGCGGCGCAGCTGCTGCAGGAGTCCGAGGACCTGCACGGGCCGGATCAGCG
CCTGGCGCAGATCATCCAGGACCACTCGCGGCGCATGAACCTGATCATCGAGAACGTGCTGCAGCTGTCACGGCGCCGCC
AGGCCGAGCCGCAACTGCTCGACCTCAAGTACTGGCTGCACCGTTTCGCCGCCGAGTTCCGCAGCACCGCCCCGGCCTCC
AAGGTGCTGCACCTGGCCATCGAAGGCAGCAGCATCCAGACGCGCATGGACCCCAACCAGCTCAACCAGGTCATCACCAA
CCTGGTGCAGAACGGCCTGCGCCACAGCGCCAAGCTCAACCCCCAGGGCCAGGTGTGGCTGAAGCTGTTTCGCGATCCGC
GCAACGACCTGCCGGTGCTGGAGGTGCTCGACGACGGCGAAGGCGTACCGGCAGACCAACTGCATCACATCTTCGAGCCG
TTCTACACCACGGAGAACAAAGGCACCGGCCTGGGCCTGTATATTTCCCGCGAGCTTTGCGAAAGCAACCAGGCTCATCT
TCACTATCAACCACGCGAAGGCGGCGGTGCCTGCTTCCGTATCACCTTCGCGCACCCGCGAAAAATGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.896

97.925

0.645