Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K8940_RS10860 Genome accession   NZ_CP082923
Coordinates   2355634..2356143 (+) Length   169 a.a.
NCBI ID   WP_223395431.1    Uniprot ID   -
Organism   Caulobacter segnis strain CBR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2350634..2361143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8940_RS10840 (K8940_10785) pseH 2350811..2351365 (+) 555 WP_223395427.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  K8940_RS10845 (K8940_10790) - 2351445..2354312 (+) 2868 WP_223395428.1 hypothetical protein -
  K8940_RS10850 (K8940_10795) - 2354370..2355056 (+) 687 WP_223395429.1 hypothetical protein -
  K8940_RS10855 (K8940_10800) - 2355078..2355479 (+) 402 WP_223395430.1 hypothetical protein -
  K8940_RS10860 (K8940_10805) ssb 2355634..2356143 (+) 510 WP_223395431.1 single-stranded DNA-binding protein Machinery gene
  K8940_RS10865 (K8940_10810) - 2356359..2356853 (-) 495 WP_223395432.1 GNAT family N-acetyltransferase -
  K8940_RS10870 (K8940_10815) ppdK 2357214..2359901 (+) 2688 WP_223395434.1 pyruvate, phosphate dikinase -
  K8940_RS10875 (K8940_10820) - 2359976..2360635 (+) 660 WP_223395436.1 SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18033.87 Da        Isoelectric Point: 5.3491

>NTDB_id=603535 K8940_RS10860 WP_223395431.1 2355634..2356143(+) (ssb) [Caulobacter segnis strain CBR1]
MAGSVNKVILVGNLGADPEIRSLGSGDRVANLRIATSETWRDRNSGERKEKTEWHRVVIFNDNLVKVAEQYLRKGSTVYI
EGAIQTRKWTDNTGVEKYSTEIVLQKFRGELTMLGGRGDSAGASAGGGEEYGGGYSGGGGSSFGGGAPRSQPSGPRESFS
ADLDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=603535 K8940_RS10860 WP_223395431.1 2355634..2356143(+) (ssb) [Caulobacter segnis strain CBR1]
ATGGCTGGCAGCGTCAATAAGGTCATTCTGGTGGGCAATCTCGGGGCTGATCCCGAGATCCGCAGCCTGGGTTCGGGCGA
CCGCGTCGCCAATCTCCGTATCGCGACGTCCGAGACCTGGCGCGACCGCAACAGCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGCGTCGTGATCTTCAACGACAACCTGGTGAAGGTGGCCGAGCAGTACCTGCGCAAGGGCTCGACGGTCTACATC
GAGGGCGCGATCCAGACCCGCAAGTGGACCGACAACACCGGCGTCGAGAAGTATTCGACCGAGATCGTGCTGCAGAAGTT
CCGTGGCGAACTGACCATGCTGGGCGGTCGCGGCGACAGCGCCGGCGCCTCGGCGGGCGGCGGTGAGGAATACGGCGGCG
GCTATTCGGGCGGCGGCGGCTCCAGCTTCGGCGGCGGCGCGCCGCGCAGCCAGCCCAGCGGCCCGCGCGAGAGCTTCTCG
GCCGACTTGGACGACGAGATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.286

100

0.521
  ssb Glaesserella parasuis strain SC1401

46.703

100

0.503
  ssb Neisseria gonorrhoeae MS11

41.081

100

0.45
  ssb Neisseria meningitidis MC58

41.081

100

0.45