Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6958_RS18510 Genome accession   NZ_CP082904
Coordinates   3896383..3896931 (-) Length   182 a.a.
NCBI ID   WP_249892478.1    Uniprot ID   -
Organism   Mixta hanseatica isolate X22927     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3891383..3901931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6958_RS18490 (K6958_18475) - 3892085..3893692 (+) 1608 WP_249892474.1 inorganic phosphate transporter -
  K6958_RS18495 (K6958_18480) - 3893797..3894102 (+) 306 WP_249892475.1 hypothetical protein -
  K6958_RS18500 (K6958_18485) - 3894287..3895180 (-) 894 WP_249892476.1 ATP-binding domain-containing protein -
  K6958_RS18505 (K6958_18490) - 3895241..3896083 (-) 843 WP_249892477.1 hypothetical protein -
  K6958_RS18510 (K6958_18495) ssb 3896383..3896931 (-) 549 WP_249892478.1 single-stranded DNA-binding protein Machinery gene
  K6958_RS18515 (K6958_18500) uvrA 3897156..3899987 (+) 2832 WP_249892479.1 excinuclease ABC subunit UvrA -
  K6958_RS18520 (K6958_18505) - 3900225..3901289 (+) 1065 WP_249892480.1 NAD(P)-dependent alcohol dehydrogenase -
  K6958_RS18525 (K6958_18510) - 3901325..3901663 (-) 339 WP_249892481.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19294.23 Da        Isoelectric Point: 5.2456

>NTDB_id=603420 K6958_RS18510 WP_249892478.1 3896383..3896931(-) (ssb) [Mixta hanseatica isolate X22927]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQERYTTEVVVNVGGTMQMLGGRQGGGAGAPAGGGMGGSNSNNNGWGQPQQPQGGSQFSGGGQAPAR
PQQQSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=603420 K6958_RS18510 WP_249892478.1 3896383..3896931(-) (ssb) [Mixta hanseatica isolate X22927]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGTTATATGCCTAATGG
TGGAGCCGTAGCGAATATTACGCTGGCTACCTCCGAAAGCTGGCGTGACAAGCAGACCGGAGAGACCAAAGAGAAAACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTAGCAGGTGAATACCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCTCTCTGCAAACGCGCAAATGGCAGGATCAGAGCGGCCAGGAACGTTACACCACGGAAGTGGTCGTTAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCAGGCGCGCCGGCAGGCGGCGGTATGGGCGGCAGCAACA
GCAATAATAACGGCTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAGCCAGTTCAGCGGCGGCGGCCAGGCACCTGCTCGT
CCGCAGCAGCAGAGCGCGCCGGCAAATAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.224

100

0.736
  ssb Glaesserella parasuis strain SC1401

56.044

100

0.56
  ssb Neisseria meningitidis MC58

48.023

97.253

0.467
  ssb Neisseria gonorrhoeae MS11

48.023

97.253

0.467