Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K8O95_RS04660 Genome accession   NZ_CP082887
Coordinates   964290..964856 (-) Length   188 a.a.
NCBI ID   WP_026456622.1    Uniprot ID   A0A175VIV7
Organism   Aeromonas enteropelogenes strain FDAARGOS_1459     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 959290..969856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O95_RS04640 (K8O95_04640) - 959566..960924 (-) 1359 WP_026458174.1 NCS2 family permease -
  K8O95_RS04645 (K8O95_04645) cspA 961225..961437 (-) 213 WP_026458175.1 RNA chaperone/antiterminator CspA -
  K8O95_RS04650 (K8O95_04650) - 961897..962799 (-) 903 WP_223379800.1 cation diffusion facilitator family transporter -
  K8O95_RS20400 - 963221..963346 (+) 126 WP_019445191.1 hypothetical protein -
  K8O95_RS04655 (K8O95_04655) - 963421..964164 (-) 744 WP_223379801.1 substrate-binding periplasmic protein -
  K8O95_RS04660 (K8O95_04660) ssb 964290..964856 (-) 567 WP_026456622.1 single-stranded DNA-binding protein Machinery gene
  K8O95_RS04665 (K8O95_04665) uvrA 965238..968063 (+) 2826 WP_223379802.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20858.29 Da        Isoelectric Point: 5.9301

>NTDB_id=603363 K8O95_RS04660 WP_026456622.1 964290..964856(-) (ssb) [Aeromonas enteropelogenes strain FDAARGOS_1459]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFSGVMQMLGGRPQGAGQGMGGQNQGGWGQPQQAMQQPMNQQRPAPQQNMQQQGG
YGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=603363 K8O95_RS04660 WP_026456622.1 964290..964856(-) (ssb) [Aeromonas enteropelogenes strain FDAARGOS_1459]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACCCTGGCCACCTCTGAAACCTGGCGCGACAAGCAAACCGGCGAGCAGAAAGAGCGCACCG
AATGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAAGTCGCCGGCGAATACCTGAAAAAGGGTTCCCAGGTCTATGTG
GAAGGCAAGCTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAACGCTACACCACCGAAGTGCTGGTCGACAGCTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGCCGGTCAGGGTATGGGTGGCCAGAACCAGGGTGGCTGGG
GCCAGCCGCAGCAGGCCATGCAGCAGCCGATGAACCAGCAGCGTCCCGCTCCGCAGCAAAACATGCAGCAGCAGGGTGGT
TACGGCCGACCGGCTCAGCAGCCCCAGTCAGCTCCGCCGGTCTATAACGAGCCGCCGATGGATTTCGACGACGATATTCC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A175VIV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.912

100

0.707
  ssb Glaesserella parasuis strain SC1401

53.763

98.936

0.532
  ssb Neisseria gonorrhoeae MS11

48.913

97.872

0.479
  ssb Neisseria meningitidis MC58

48.37

97.872

0.473