Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K8P63_RS02055 Genome accession   NZ_CP082839
Coordinates   449171..449713 (-) Length   180 a.a.
NCBI ID   WP_223798228.1    Uniprot ID   -
Organism   Sphingomonas nostoxanthinifaciens strain AK-PDB1-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 444171..454713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P63_RS02025 (K8P63_02015) rfbD 444311..445183 (+) 873 WP_223798222.1 dTDP-4-dehydrorhamnose reductase -
  K8P63_RS02030 (K8P63_02020) rfbA 445180..446052 (+) 873 WP_223798223.1 glucose-1-phosphate thymidylyltransferase RfbA -
  K8P63_RS02035 (K8P63_02025) - 446071..446568 (-) 498 WP_223798224.1 outer membrane protein assembly factor BamE -
  K8P63_RS02040 (K8P63_02030) - 446674..447204 (+) 531 WP_223798225.1 ubiquinol-cytochrome C chaperone family protein -
  K8P63_RS02045 (K8P63_02035) - 447201..447716 (+) 516 WP_223798226.1 DUF177 domain-containing protein -
  K8P63_RS02050 (K8P63_02040) - 447793..449109 (+) 1317 WP_223798227.1 methyl-accepting chemotaxis protein -
  K8P63_RS02055 (K8P63_02045) ssb 449171..449713 (-) 543 WP_223798228.1 single-stranded DNA-binding protein Machinery gene
  K8P63_RS02060 (K8P63_02050) - 449819..451678 (-) 1860 WP_223798229.1 ferrous iron transporter B -
  K8P63_RS02065 (K8P63_02055) - 451675..451908 (-) 234 WP_223798230.1 FeoA family protein -
  K8P63_RS02070 (K8P63_02060) rnhA 451994..452443 (-) 450 WP_223798231.1 ribonuclease HI -
  K8P63_RS02075 (K8P63_02065) thrB 452440..453408 (-) 969 WP_223798232.1 homoserine kinase -
  K8P63_RS02080 (K8P63_02070) ispH 453425..454393 (-) 969 WP_223798233.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18735.35 Da        Isoelectric Point: 5.3323

>NTDB_id=602849 K8P63_RS02055 WP_223798228.1 449171..449713(-) (ssb) [Sphingomonas nostoxanthinifaciens strain AK-PDB1-5]
MAGSVNKVILVGNLGRDPESRSFQNGGKVVNLRIATSETWKDRASGERKEKTEWHSVAIFNEGLANTAERYLRKGSKVYI
EGQLQTRKWQGSDGQDKYSTEIVLQGFNGTLVMLDGREGGGGGGAGGGWSGGDDSSFVGSGGDRGAGGGRDFGGGNRGGG
SGGGSKPQPFDSDLDDDVPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=602849 K8P63_RS02055 WP_223798228.1 449171..449713(-) (ssb) [Sphingomonas nostoxanthinifaciens strain AK-PDB1-5]
ATGGCTGGCAGCGTCAACAAGGTGATCCTGGTCGGCAATCTGGGCCGCGATCCCGAATCGCGCAGCTTCCAGAATGGCGG
CAAGGTCGTGAACCTGCGCATCGCCACGTCGGAGACGTGGAAGGACCGCGCTTCGGGCGAGCGCAAGGAGAAGACCGAAT
GGCATTCGGTCGCGATCTTCAACGAAGGCCTCGCCAACACCGCCGAGCGCTATCTGCGCAAGGGCAGCAAGGTGTATATC
GAAGGCCAGCTGCAGACGCGGAAGTGGCAGGGCAGCGACGGCCAGGACAAATATTCGACCGAGATCGTGCTGCAGGGTTT
CAACGGCACCTTGGTGATGCTCGACGGCCGTGAAGGCGGCGGTGGTGGCGGCGCCGGCGGCGGCTGGAGCGGGGGCGATG
ACAGCAGCTTCGTCGGTAGCGGCGGCGATCGGGGCGCCGGCGGCGGGCGTGACTTCGGGGGCGGCAATCGCGGCGGTGGC
AGCGGCGGTGGCAGCAAGCCGCAGCCGTTCGACAGCGATCTCGACGACGATGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.685

98.889

0.511
  ssb Glaesserella parasuis strain SC1401

46.774

100

0.483
  ssb Neisseria gonorrhoeae MS11

39.227

100

0.394
  ssb Neisseria meningitidis MC58

39.227

100

0.394