Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NHF43_RS12460 Genome accession   NZ_CP099752
Coordinates   2574898..2575434 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 806883-11-2019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2569898..2580434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHF43_RS12440 (NHF43_12430) soxR 2571626..2572090 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  NHF43_RS12445 (NHF43_12435) soxS 2572176..2572499 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NHF43_RS12450 (NHF43_12440) pdeC 2572502..2574088 (-) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  NHF43_RS12455 (NHF43_12445) yjcB 2574518..2574799 (+) 282 WP_001295689.1 YjcB family protein -
  NHF43_RS12460 (NHF43_12450) ssb 2574898..2575434 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NHF43_RS12465 (NHF43_12455) uvrA 2575688..2578510 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  NHF43_RS12470 (NHF43_12460) yjbR 2578545..2578901 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NHF43_RS12475 (NHF43_12465) yjbQ 2578905..2579321 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NHF43_RS12480 (NHF43_12470) aphA 2579432..2580145 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=602674 NHF43_RS12460 WP_000168305.1 2574898..2575434(-) (ssb) [Escherichia coli strain 806883-11-2019]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=602674 NHF43_RS12460 WP_000168305.1 2574898..2575434(-) (ssb) [Escherichia coli strain 806883-11-2019]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489