Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   JSY00_RS02170 Genome accession   NZ_CP082778
Coordinates   427476..428141 (+) Length   221 a.a.
NCBI ID   WP_044668887.1    Uniprot ID   A0A0Z8IMZ9
Organism   Streptococcus suis strain ID32098     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 422476..433141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSY00_RS02145 (JSY00_02145) - 422687..424087 (+) 1401 WP_044668895.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  JSY00_RS02150 (JSY00_02150) - 424089..424460 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  JSY00_RS02155 (JSY00_02155) cysK 424486..425412 (-) 927 WP_044668892.1 cysteine synthase A -
  JSY00_RS02160 (JSY00_02160) - 425502..426134 (-) 633 WP_015646510.1 YigZ family protein -
  JSY00_RS02165 (JSY00_02165) comFA/cflA 426191..427483 (+) 1293 WP_044668890.1 DEAD/DEAH box helicase Machinery gene
  JSY00_RS02170 (JSY00_02170) comFC/cflB 427476..428141 (+) 666 WP_044668887.1 ComF family protein Machinery gene
  JSY00_RS02175 (JSY00_02175) hpf 428218..428760 (+) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25716.55 Da        Isoelectric Point: 8.4541

>NTDB_id=602096 JSY00_RS02170 WP_044668887.1 427476..428141(+) (comFC/cflB) [Streptococcus suis strain ID32098]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLNATNIPYQSLLGKYESPKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=602096 JSY00_RS02170 WP_044668887.1 427476..428141(+) (comFC/cflB) [Streptococcus suis strain ID32098]
ATGTCTAATTGCCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTTATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAACGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAAAGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCCAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8IMZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484