Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | CHBNTHi_RS03975 | Genome accession | NZ_AP018781 |
| Coordinates | 781801..782808 (+) | Length | 335 a.a. |
| NCBI ID | WP_005649027.1 | Uniprot ID | Q4QNM6 |
| Organism | Haemophilus influenzae strain CHBN-V-1 isolate 13H43 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 776801..787808
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CHBNTHi_RS03950 (CHBNV1_07590) | aspS | 777485..779251 (+) | 1767 | WP_005669001.1 | aspartate--tRNA ligase | - |
| CHBNTHi_RS03955 (CHBNV1_07600) | nudB | 779273..779746 (+) | 474 | WP_005666660.1 | dihydroneopterin triphosphate diphosphatase | - |
| CHBNTHi_RS03960 (CHBNV1_07610) | - | 779758..780498 (+) | 741 | WP_005649034.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| CHBNTHi_RS03965 (CHBNV1_07620) | ruvC | 780545..781117 (+) | 573 | WP_005628536.1 | crossover junction endodeoxyribonuclease RuvC | - |
| CHBNTHi_RS03970 (CHBNV1_07630) | ruvA | 781179..781793 (+) | 615 | WP_005659994.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| CHBNTHi_RS03975 (CHBNV1_07640) | ruvB | 781801..782808 (+) | 1008 | WP_005649027.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| CHBNTHi_RS03980 (CHBNV1_07650) | - | 782860..783147 (-) | 288 | WP_005659998.1 | DUF5339 domain-containing protein | - |
| CHBNTHi_RS03985 (CHBNV1_07660) | xerD | 783320..784213 (-) | 894 | WP_005649023.1 | site-specific tyrosine recombinase XerD | - |
| CHBNTHi_RS03990 (CHBNV1_07670) | - | 784244..785410 (-) | 1167 | WP_075985528.1 | 3-phenylpropionate MFS transporter | - |
| CHBNTHi_RS03995 (CHBNV1_07680) | proC | 785410..786225 (-) | 816 | WP_005649013.1 | pyrroline-5-carboxylate reductase | - |
| CHBNTHi_RS04000 (CHBNV1_07690) | - | 786291..786851 (+) | 561 | WP_238144856.1 | primase alpha helix C-terminal domain-containing protein | - |
| CHBNTHi_RS04005 (CHBNV1_07700) | - | 787018..787170 (-) | 153 | WP_005649008.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 37076.41 Da Isoelectric Point: 4.7793
>NTDB_id=60175 CHBNTHi_RS03975 WP_005649027.1 781801..782808(+) (ruvB) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD
Nucleotide
Download Length: 1008 bp
>NTDB_id=60175 CHBNTHi_RS03975 WP_005649027.1 781801..782808(+) (ruvB) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCAGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACATCAGGGCCTGTATTAGAAAAAGCGGGAGATTTAGCCGCAATGCTAACCAATCTTGAACCGCA
TGATGTATTATTTATTGATGAAATCCATCGACTTTCCCCTGCGATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCACCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGACGGTGGGCCTGTGGGGCTAGATAATCTTGCCGCTGCGATCGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGTGGTCGTATTGCA
ACATCACAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCAGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACATCAGGGCCTGTATTAGAAAAAGCGGGAGATTTAGCCGCAATGCTAACCAATCTTGAACCGCA
TGATGTATTATTTATTGATGAAATCCATCGACTTTCCCCTGCGATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCACCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGACGGTGGGCCTGTGGGGCTAGATAATCTTGCCGCTGCGATCGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGTGGTCGTATTGCA
ACATCACAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
62.385 |
97.612 |
0.609 |
| ruvB | Streptococcus pneumoniae TIGR4 |
57.975 |
97.313 |
0.564 |
| ruvB | Streptococcus pneumoniae R6 |
57.975 |
97.313 |
0.564 |
| ruvB | Streptococcus pneumoniae D39 |
57.975 |
97.313 |
0.564 |
| ruvB | Helicobacter pylori 26695 |
54.633 |
93.433 |
0.51 |
| ruvB | Synechocystis sp. PCC 6803 |
55.016 |
92.239 |
0.507 |