Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K7H07_RS12125 Genome accession   NZ_CP082336
Coordinates   2508646..2509167 (-) Length   173 a.a.
NCBI ID   WP_002509650.1    Uniprot ID   A0A7V7VFU9
Organism   Staphylococcus arlettae strain AHKW2e     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2503646..2514167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7H07_RS12125 (K7H07_12125) ssbA 2508646..2509167 (-) 522 WP_002509650.1 single-stranded DNA-binding protein Machinery gene
  K7H07_RS12130 (K7H07_12130) rpsF 2509182..2509487 (-) 306 WP_002509651.1 30S ribosomal protein S6 -
  K7H07_RS12135 (K7H07_12135) - 2509820..2510605 (+) 786 WP_222985188.1 GH25 family lysozyme -
  K7H07_RS12140 (K7H07_12140) ychF 2510725..2511822 (-) 1098 WP_002509653.1 redox-regulated ATPase YchF -
  K7H07_RS12145 (K7H07_12145) - 2511822..2512037 (-) 216 WP_002509654.1 DUF951 domain-containing protein -
  K7H07_RS12150 (K7H07_12150) - 2512056..2512943 (-) 888 WP_002509655.1 mechanosensitive ion channel family protein -
  K7H07_RS12155 (K7H07_12155) - 2513199..2514050 (+) 852 WP_021459361.1 sialate O-acetylesterase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19108.61 Da        Isoelectric Point: 4.9056

>NTDB_id=601597 K7H07_RS12125 WP_002509650.1 2508646..2509167(-) (ssbA) [Staphylococcus arlettae strain AHKW2e]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLSKGSLAGVDGRIQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNQNQRHNQSSGNNFQDYGQGFGGQQAGQNTSSYQNNNNNNSSNSGQSDNPFANA
NGPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=601597 K7H07_RS12125 WP_002509650.1 2508646..2509167(-) (ssbA) [Staphylococcus arlettae strain AHKW2e]
ATGATAAACAGAGTTGTTTTAGTAGGTCGTTTAACAAAGGATCCAGAATATAGAACAACACCCTCAGGCGTGAGCGTTGC
GACTTTTACTTTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTAGTTT
TTAGAAAACAAGCAGAAAATGTGAATAATTACTTATCAAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATACAATCACGT
AACTATGAAAACCAAGAAGGGCGTCGTGTGTTTGTCACTGAAGTTGTTTGTGACAGCGTTCAATTCCTTGAACCGAAAAA
TCAAAACCAACGTCACAATCAGTCTTCTGGTAATAATTTCCAAGATTATGGACAAGGTTTTGGTGGTCAACAAGCAGGTC
AAAACACGTCATCTTATCAAAATAATAACAACAACAATTCATCAAACTCAGGTCAATCTGATAATCCTTTTGCGAATGCA
AATGGACCGATTGATATCAGTGATGATGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V7VFU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.128

100

0.653
  ssb Latilactobacillus sakei subsp. sakei 23K

57.471

100

0.578
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

63.584

0.376
  ssb Glaesserella parasuis strain SC1401

34.946

100

0.376