Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   LPT16_RS01795 Genome accession   NZ_CP099495
Coordinates   329086..330090 (+) Length   334 a.a.
NCBI ID   WP_001005766.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JL28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 324086..335090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT16_RS01760 (LPT16_01760) mreD 324244..324774 (+) 531 WP_001259929.1 rod shape-determining protein MreD -
  LPT16_RS01765 (LPT16_01765) rplU 325261..325569 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  LPT16_RS01770 (LPT16_01770) - 325575..325895 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  LPT16_RS01775 (LPT16_01775) rpmA 325907..326191 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  LPT16_RS01780 (LPT16_01780) obgE 326678..327970 (+) 1293 WP_000496090.1 GTPase ObgE -
  LPT16_RS01785 (LPT16_01785) - 327983..328438 (+) 456 WP_000368902.1 ACT domain-containing protein -
  LPT16_RS01790 (LPT16_01790) ruvA 328452..329054 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  LPT16_RS01795 (LPT16_01795) ruvB 329086..330090 (+) 1005 WP_001005766.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LPT16_RS01800 (LPT16_01800) queA 330092..331117 (+) 1026 WP_001019177.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LPT16_RS01805 (LPT16_01805) tgt 331140..332279 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  LPT16_RS01810 (LPT16_01810) yajC 332298..332558 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37687.98 Da        Isoelectric Point: 5.0865

>NTDB_id=601524 LPT16_RS01795 WP_001005766.1 329086..330090(+) (ruvB) [Staphylococcus aureus strain JL28]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDAIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=601524 LPT16_RS01795 WP_001005766.1 329086..330090(+) (ruvB) [Staphylococcus aureus strain JL28]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATTATTGCCAATGAAATGGAAGTAAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACT
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTAGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCCAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATGCGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.644

97.605

0.641
  ruvB Streptococcus pneumoniae TIGR4

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae R6

57.576

98.802

0.569
  ruvB Streptococcus pneumoniae D39

57.576

98.802

0.569
  ruvB Helicobacter pylori 26695

56.173

97.006

0.545
  ruvB Synechocystis sp. PCC 6803

54.062

95.808

0.518