Detailed information    

insolico Bioinformatically predicted

Overview

Name   pknB   Type   Regulator
Locus tag   NC516_RS03700 Genome accession   NZ_CP099485
Coordinates   722279..724162 (+) Length   627 a.a.
NCBI ID   WP_025015867.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0095     
Function   modulate the activity of ComDE; modulate the activity of VicKR (predicted from homology)   
Competence regulation

Genomic Context

Location: 717279..729162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS03685 (NC516_03685) fmt 719225..720181 (+) 957 WP_025015869.1 methionyl-tRNA formyltransferase -
  NC516_RS03690 (NC516_03690) rsmB 720171..721514 (+) 1344 WP_076647399.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NC516_RS03695 (NC516_03695) - 721536..722282 (+) 747 WP_182159332.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  NC516_RS03700 (NC516_03700) pknB 722279..724162 (+) 1884 WP_025015867.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  NC516_RS03705 (NC516_03705) rsgA 724262..725161 (+) 900 WP_011374402.1 ribosome small subunit-dependent GTPase A -
  NC516_RS03710 (NC516_03710) rpe 725185..725847 (+) 663 WP_016264866.1 ribulose-phosphate 3-epimerase -
  NC516_RS03715 (NC516_03715) - 725834..726484 (+) 651 WP_016264867.1 thiamine diphosphokinase -
  NC516_RS03720 (NC516_03720) rpmB 726833..727018 (-) 186 WP_004265581.1 50S ribosomal protein L28 -
  NC516_RS03725 (NC516_03725) - 727321..727683 (+) 363 WP_016264868.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 627 a.a.        Molecular weight: 68228.85 Da        Isoelectric Point: 5.9848

>NTDB_id=601461 NC516_RS03700 WP_025015867.1 722279..724162(+) (pknB) [Latilactobacillus sakei strain WiKim0095]
MMETGYAVAGRYKIIRPIGEGGMANVYLAQDLILDRQVAVKVLRLDLRNDPDTVRRFTREALATTELNHPNIVSIYDVGE
ENSMQYIIMEYIKGTDLKKYIVEHFPIPYQRVIDIMTQILSAVQNAHAHNIIHRDLKPQNILVDEDGNVKISDFGIAIAL
SETAMTQTNTLLGSVHYLSPEQARGSMATKRSDIYSLGIVLYELLTGMVPFEGESAVSIAIKHFQDEVPPVRNYDPRIPQ
ALENVVLKATAKDPDERYSGVDAMMADLATSLSASRAHEPKFVPSKADDLSETKVIPALDPEGITQTNNDEEQVKEAEPT
QKKVKKPAKSKRKWWLLGGGVVLLLLLATVIAFAVQGSEVTVPDLTDMTQQNAESALTDKKLKVGTVQKTTSQKYSKGHV
IRTTPKAGLSVKSRSTVNLIVSSGRQKYKIKDYTNQAYSDVRDALKDKGLKVKRKYQSSSEVSPGLIIDQSIAAGKRVVP
SKTTITLTVSSGKPGFALHNLSNYTKQGIQDYAAQNGLTVVFSEEYSSSISEGMVISQSPASGTMVQEGDSVSVILSKGE
QPTEHHSIVTSSSNSVIESSAPESSQSSESSASESESESESESESESASESISSSASQSSQSSVQSK

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=601461 NC516_RS03700 WP_025015867.1 722279..724162(+) (pknB) [Latilactobacillus sakei strain WiKim0095]
ATGATGGAAACAGGGTACGCTGTAGCGGGGCGTTATAAGATTATTCGCCCCATCGGTGAAGGTGGCATGGCTAATGTTTA
TTTGGCGCAGGATCTAATTTTAGATCGGCAAGTGGCAGTTAAAGTTTTACGATTAGATCTCCGAAATGATCCGGATACAG
TCCGACGGTTTACGCGAGAAGCGTTGGCAACGACGGAATTAAATCATCCGAATATTGTTAGTATTTACGATGTTGGTGAA
GAAAACAGTATGCAATACATCATTATGGAATATATTAAGGGCACCGATCTTAAGAAATATATCGTGGAACACTTTCCAAT
TCCTTATCAACGCGTAATTGATATTATGACGCAGATTTTATCTGCGGTTCAAAACGCACATGCGCATAATATTATTCATC
GGGATTTAAAACCACAAAATATTTTGGTTGATGAAGACGGCAACGTTAAGATTAGTGACTTTGGGATTGCGATTGCGCTT
AGTGAAACGGCGATGACTCAGACCAATACGTTGTTGGGGTCTGTTCATTATCTCTCACCGGAACAGGCAAGAGGTTCGAT
GGCGACGAAACGGTCTGATATTTACTCGTTAGGAATTGTGCTTTATGAGTTATTGACGGGGATGGTGCCTTTTGAAGGCG
AGTCCGCTGTTTCAATTGCGATTAAGCATTTCCAAGATGAAGTCCCACCAGTACGCAACTATGATCCACGTATTCCGCAA
GCCTTGGAAAATGTCGTCTTAAAAGCGACTGCCAAGGATCCGGATGAACGCTATAGTGGTGTTGATGCAATGATGGCTGA
CTTAGCAACTTCTTTATCAGCTAGTCGTGCGCACGAACCTAAATTTGTGCCATCAAAAGCGGATGATTTGAGTGAGACTA
AGGTGATTCCCGCACTAGATCCAGAAGGCATTACGCAAACCAACAATGATGAGGAACAAGTTAAAGAAGCAGAACCAACT
CAGAAAAAGGTTAAAAAGCCAGCTAAGTCTAAACGTAAGTGGTGGCTACTAGGTGGCGGTGTTGTTTTATTGCTGTTATT
AGCAACGGTGATTGCTTTTGCGGTTCAGGGGAGCGAAGTAACCGTCCCTGATTTAACGGATATGACACAACAAAATGCGG
AATCTGCTTTGACCGATAAAAAACTGAAGGTCGGTACGGTTCAAAAAACAACGAGTCAGAAATACAGTAAGGGCCACGTC
ATTCGAACAACACCTAAAGCGGGCCTGAGTGTAAAATCAAGAAGTACGGTTAATTTAATTGTCAGTTCAGGACGCCAAAA
GTATAAGATTAAAGACTATACGAACCAAGCATATAGTGATGTTCGGGATGCTTTGAAGGATAAAGGCTTGAAAGTTAAGC
GGAAATACCAAAGTTCATCTGAGGTGAGTCCTGGGTTGATTATCGATCAAAGTATTGCGGCTGGCAAAAGGGTCGTTCCA
AGTAAAACGACGATTACCTTAACGGTCAGCAGCGGCAAACCTGGTTTTGCATTGCATAATCTAAGCAACTATACAAAGCA
AGGGATTCAAGACTATGCTGCACAAAATGGTTTAACGGTCGTATTCTCTGAAGAATATTCATCAAGTATTTCTGAAGGAA
TGGTAATCAGTCAATCGCCTGCAAGTGGTACAATGGTTCAAGAAGGTGATAGCGTAAGCGTTATCCTTTCAAAAGGCGAG
CAACCAACTGAACATCATTCTATTGTGACGTCGAGTTCAAATTCAGTTATCGAGTCGAGTGCGCCTGAATCAAGTCAATC
GAGTGAAAGTAGCGCGAGTGAGTCAGAGAGCGAATCAGAGAGTGAATCGGAAAGCGAATCAGCAAGTGAATCGATCAGTA
GTTCAGCTAGTCAAAGTAGTCAATCGAGCGTTCAATCAAAGTAA

Domains

Predicted by InterProScan.

Protein kinase domain (Pkinase)

(12-263)

PASTA domain (PASTA)

(429-490)

PASTA domain (PASTA)

(360-422)

PASTA domain (PASTA)

(500-558)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pknB Streptococcus mutans UA159

41.88

93.301

0.391
  stkP Streptococcus pneumoniae TIGR4

40.304

94.577

0.381
  stkP Streptococcus pneumoniae D39

40.135

94.577

0.38
  stkP Streptococcus pneumoniae R6

40.135

94.577

0.38
  stkP Streptococcus pneumoniae Rx1

39.966

94.577

0.378