Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NC516_RS01895 Genome accession   NZ_CP099485
Coordinates   399732..400343 (+) Length   203 a.a.
NCBI ID   WP_099947253.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 394732..405343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS01880 (NC516_01880) hexB 396399..398360 (+) 1962 WP_146105228.1 DNA mismatch repair endonuclease MutL Machinery gene
  NC516_RS01885 (NC516_01885) - 398360..398905 (+) 546 WP_099947252.1 Maf family protein -
  NC516_RS01890 (NC516_01890) - 398918..399481 (+) 564 WP_197704868.1 TIGR00730 family Rossman fold protein -
  NC516_RS01895 (NC516_01895) ruvA 399732..400343 (+) 612 WP_099947253.1 Holliday junction branch migration protein RuvA Machinery gene
  NC516_RS01900 (NC516_01900) ruvB 400356..401363 (+) 1008 WP_011374076.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NC516_RS01905 (NC516_01905) queA 401378..402409 (+) 1032 WP_105300141.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  NC516_RS01910 (NC516_01910) - 402436..402957 (+) 522 WP_252814952.1 GNAT family protein -
  NC516_RS01915 (NC516_01915) arcA 403163..404398 (+) 1236 WP_016264645.1 arginine deiminase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22129.26 Da        Isoelectric Point: 4.8129

>NTDB_id=601446 NC516_RS01895 WP_099947253.1 399732..400343(+) (ruvA) [Latilactobacillus sakei strain WiKim0095]
MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEVVQIYVHQAVRDTDITLFGFYDLDEKQLFQKLISVSGI
GPKSALAILANSDHSGLIQAITNDDIGYLTKFPGVGKKTAQQIALDLKGKLGDLEQSATLVGQTAIDLGSQGDSPELSDA
LAALSALGYSAREVKAITPKLTDFAAQTTDQYLREGLRLLMKK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=601446 NC516_RS01895 WP_099947253.1 399732..400343(+) (ruvA) [Latilactobacillus sakei strain WiKim0095]
ATGTATGAATATTTAAAGGGTTTAGTGACGGCGGTTAATCCGTATTATGTTGTTTTGGAAGTTCAAGGAATTGGCTACCA
ATTACAAGTTGCTAATCCATATCGCTATACAGAATCAATGAGCGAAGTGGTTCAAATTTATGTCCACCAAGCGGTACGCG
ATACTGATATTACGCTTTTTGGTTTTTACGACTTAGATGAAAAACAACTTTTCCAAAAATTAATCAGTGTTTCCGGGATT
GGTCCCAAGAGTGCCTTGGCAATTTTGGCCAACAGCGACCATTCTGGTTTAATTCAAGCGATTACGAACGATGATATTGG
GTACTTAACGAAGTTCCCAGGTGTCGGGAAGAAGACGGCCCAACAGATTGCCCTAGACCTTAAAGGTAAGTTAGGCGATC
TAGAACAAAGCGCAACGTTAGTCGGTCAAACGGCAATTGATTTAGGCAGCCAAGGCGATTCACCTGAATTAAGTGACGCG
CTAGCAGCCTTGAGTGCGCTTGGCTATTCCGCACGGGAAGTCAAAGCGATTACGCCTAAGTTAACTGATTTTGCAGCGCA
AACAACTGATCAGTATCTCAGAGAAGGTTTGCGGTTATTGATGAAGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(157-201)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

48.78

100

0.493
  ruvA Streptococcus pneumoniae R6

48.78

100

0.493
  ruvA Streptococcus pneumoniae D39

48.78

100

0.493
  ruvA Bacillus subtilis subsp. subtilis str. 168

46.078

100

0.463