Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6806_RS14110 Genome accession   NZ_CP082319
Coordinates   2937249..2937788 (-) Length   179 a.a.
NCBI ID   WP_005387798.1    Uniprot ID   A0A2I3CBE0
Organism   Vibrio alginolyticus strain XWV9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2932249..2942788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6806_RS14090 (K6806_13980) - 2932568..2932900 (-) 333 WP_225478047.1 MSHA biogenesis protein MshK -
  K6806_RS14095 (K6806_13985) gspM 2932893..2933543 (-) 651 WP_005381197.1 type II secretion system protein GspM -
  K6806_RS14100 (K6806_13990) - 2933540..2934985 (-) 1446 WP_225478048.1 MSHA biogenesis protein MshI -
  K6806_RS14105 (K6806_13995) csrD 2934997..2937006 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  K6806_RS14110 (K6806_14000) ssb 2937249..2937788 (-) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  K6806_RS14115 (K6806_14005) qstR 2938066..2938710 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  K6806_RS14120 (K6806_14010) galU 2938870..2939742 (+) 873 WP_238952127.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K6806_RS14125 (K6806_14015) uvrA 2939892..2942714 (+) 2823 WP_054575329.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19902.97 Da        Isoelectric Point: 4.9164

>NTDB_id=601434 K6806_RS14110 WP_005387798.1 2937249..2937788(-) (ssb) [Vibrio alginolyticus strain XWV9]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=601434 K6806_RS14110 WP_005387798.1 2937249..2937788(-) (ssb) [Vibrio alginolyticus strain XWV9]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTCTACATT
GAAGGGCAACTGCAAACTCGAAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.781

100

0.816
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

45.405

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.464