Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   K6749_RS13875 Genome accession   NZ_CP082310
Coordinates   2976942..2977457 (-) Length   171 a.a.
NCBI ID   WP_005382766.1    Uniprot ID   A0A2I3CBC3
Organism   Vibrio alginolyticus strain HYV1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2971942..2982457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6749_RS13860 (K6749_13780) aroB 2973332..2974432 (-) 1101 WP_005381318.1 3-dehydroquinate synthase -
  K6749_RS13865 (K6749_13785) aroK 2974465..2974983 (-) 519 WP_005381319.1 shikimate kinase AroK -
  K6749_RS13870 (K6749_13790) pilQ 2975171..2976916 (-) 1746 WP_042523674.1 type IV pilus secretin PilQ family protein Machinery gene
  K6749_RS13875 (K6749_13795) pilP 2976942..2977457 (-) 516 WP_005382766.1 pilus assembly protein PilP Machinery gene
  K6749_RS13880 (K6749_13800) pilO 2977447..2978040 (-) 594 WP_042523672.1 type 4a pilus biogenesis protein PilO Machinery gene
  K6749_RS13885 (K6749_13805) pilN 2978033..2978608 (-) 576 WP_017821732.1 PilN domain-containing protein Machinery gene
  K6749_RS13890 (K6749_13810) pilM 2978592..2979608 (-) 1017 WP_005382774.1 type IV pilus assembly protein PilM Machinery gene
  K6749_RS13895 (K6749_13815) - 2979753..2982314 (+) 2562 WP_025768081.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19065.24 Da        Isoelectric Point: 10.4342

>NTDB_id=601249 K6749_RS13875 WP_005382766.1 2976942..2977457(-) (pilP) [Vibrio alginolyticus strain HYV1]
MTSKSLLLVLMGSLLMGCQANDESLTDFIRGVETQARREVEKLKPADKYVAVTYAPEVQRAPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMDNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=601249 K6749_RS13875 WP_005382766.1 2976942..2977457(-) (pilP) [Vibrio alginolyticus strain HYV1]
ATGACAAGTAAGTCTTTGTTGCTGGTACTGATGGGTTCTCTATTGATGGGCTGCCAGGCGAATGATGAATCATTGACGGA
TTTTATTCGAGGAGTGGAAACACAGGCGCGTCGAGAGGTCGAGAAGCTTAAGCCCGCAGACAAGTATGTTGCAGTCACGT
ACGCACCGGAAGTACAGCGTGCACCCTTTGAATTACCCAAAGAAGCCACCATCGCGACTCAGCCAGTTGCAAGAAAAGAT
TGTTGGCAACCGCCCTCAAGAAGGCGAACTGGCAAATTAGAAAAATTCCCATTAAGCCAATTACGTTTGAAAGGTGTCAT
GGGCATGGATAACACGGTTTCTGGCCTCGTTCAGGCTCCCAATGGCACCGTCTATAAAGTTAAGCCGGGTCAATACCTTG
GACGCAATAATGGCAAAGTGACCCATGTCAGCCACTCCTACTTGTTGATTAATGAAACGTTGCCCGACGGCTTAGGGTGT
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

84.795

100

0.848
  pilP Vibrio cholerae strain A1552

56.977

100

0.573