Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   K6748_RS09265 Genome accession   NZ_CP082307
Coordinates   1970943..1971530 (-) Length   195 a.a.
NCBI ID   WP_053303184.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HNV2     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1965943..1976530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6748_RS09245 (K6748_09175) - 1966020..1967288 (-) 1269 WP_005389614.1 DUF945 family protein -
  K6748_RS09250 (K6748_09180) - 1967475..1969415 (+) 1941 WP_205460909.1 ATP-binding protein -
  K6748_RS09255 (K6748_09185) - 1969412..1969909 (+) 498 WP_017820839.1 response regulator -
  K6748_RS09260 (K6748_09190) - 1970201..1970749 (+) 549 WP_005378006.1 hypothetical protein -
  K6748_RS09265 (K6748_09195) tfoX 1970943..1971530 (-) 588 WP_053303184.1 TfoX/Sxy family DNA transformation protein Regulator
  K6748_RS09270 (K6748_09200) - 1971900..1972820 (+) 921 WP_005378009.1 HDOD domain-containing protein -
  K6748_RS09275 (K6748_09205) - 1972967..1973872 (+) 906 WP_053303185.1 lysine exporter LysO family protein -
  K6748_RS09280 (K6748_09210) - 1974081..1974593 (+) 513 WP_017634875.1 hypothetical protein -
  K6748_RS09285 (K6748_09215) panP 1974805..1976451 (+) 1647 WP_005378019.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22426.76 Da        Isoelectric Point: 8.0901

>NTDB_id=601194 K6748_RS09265 WP_053303184.1 1970943..1971530(-) (tfoX) [Vibrio alginolyticus strain HNV2]
MDMTDQAFFKYVRTFSEYQKRSMFGGIGLFTDDAMFALVSNDCCYLRGGNGLDEVFTQLSCEKYKHVKKQTTATVNYYDV
TDLFESGYVGLDELVQKSIEYSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGVDDVETFLELGPVKVFNKVKTAYGN
DVDVKLLWKFAGATDGIHWKLIQEPRKKQLLALCD

Nucleotide


Download         Length: 588 bp        

>NTDB_id=601194 K6748_RS09265 WP_053303184.1 1970943..1971530(-) (tfoX) [Vibrio alginolyticus strain HNV2]
ATGGACATGACAGACCAAGCTTTTTTTAAATATGTACGCACCTTCAGTGAGTACCAAAAACGTTCTATGTTCGGTGGTAT
TGGTTTATTCACCGATGATGCTATGTTTGCGCTTGTCAGCAATGATTGCTGCTACTTACGTGGTGGTAATGGACTAGATG
AAGTGTTTACTCAACTGAGCTGTGAGAAGTATAAGCACGTCAAAAAACAGACGACGGCAACCGTAAATTATTATGATGTA
ACCGATTTATTCGAATCCGGATATGTAGGGCTTGATGAACTGGTACAGAAATCAATTGAATACTCAATTAAGGAACGGAA
ATATCAAAAGTCCTCTGCCAGTAGACGCTTAAGAGACTTACCCAACATGCAACTAACCCTTGAACGTATGGTCAAGAAAG
CCGGTGTTGATGACGTAGAAACCTTTTTAGAACTTGGACCTGTAAAAGTCTTCAACAAAGTTAAAACGGCTTACGGTAAT
GATGTTGATGTAAAGCTACTGTGGAAATTTGCTGGTGCAACTGATGGCATACATTGGAAACTGATCCAAGAGCCGCGTAA
AAAACAGTTATTGGCACTGTGTGACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

89.231

100

0.892
  tfoX Vibrio campbellii strain DS40M4

88.205

100

0.882
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

67.188

98.462

0.662
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

67.188

98.462

0.662
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

67.188

98.462

0.662
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

67.188

98.462

0.662
  tfoX Vibrio cholerae strain A1552

67.188

98.462

0.662
  tfoX Aliivibrio fischeri ES114

59.162

97.949

0.579