Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   K6745_RS13905 Genome accession   NZ_CP082303
Coordinates   2992202..2992795 (-) Length   197 a.a.
NCBI ID   WP_213916785.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FJV2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2987202..2997795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6745_RS13885 (K6745_13800) aroB 2988087..2989187 (-) 1101 WP_005381318.1 3-dehydroquinate synthase -
  K6745_RS13890 (K6745_13805) aroK 2989220..2989738 (-) 519 WP_005381319.1 shikimate kinase AroK -
  K6745_RS13895 (K6745_13810) pilQ 2989926..2991671 (-) 1746 WP_042523674.1 type IV pilus secretin PilQ Machinery gene
  K6745_RS13900 (K6745_13815) pilP 2991697..2992212 (-) 516 WP_205461596.1 pilus assembly protein PilP Machinery gene
  K6745_RS13905 (K6745_13820) pilO 2992202..2992795 (-) 594 WP_213916785.1 type 4a pilus biogenesis protein PilO Machinery gene
  K6745_RS13910 (K6745_13825) pilN 2992788..2993363 (-) 576 WP_017821732.1 PilN domain-containing protein Machinery gene
  K6745_RS13915 (K6745_13830) pilM 2993347..2994363 (-) 1017 WP_213916784.1 type IV pilus biogenesis protein PilM Machinery gene
  K6745_RS13920 (K6745_13835) - 2994508..2997069 (+) 2562 WP_213916783.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23011.53 Da        Isoelectric Point: 5.0885

>NTDB_id=601155 K6745_RS13905 WP_213916785.1 2992202..2992795(-) (pilO) [Vibrio alginolyticus strain FJV2]
MVDWQDLEIDEMAEWPLLPQIIVIALLIIVIQGLGYWFYLKPKDEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=601155 K6745_RS13905 WP_213916785.1 2992202..2992795(-) (pilO) [Vibrio alginolyticus strain FJV2]
GTGGTTGATTGGCAGGATCTCGAAATCGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTATAGTAATCGCGCTTCT
GATCATAGTGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGACGAACAGTTGAATCACTTGATTCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAGTTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
ACTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTCC
CTTTAAACATTGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGCGAAACTCTGCACTTTCGGGTGCGCGCTAACACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(48-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

86.842

96.447

0.838
  pilO Vibrio cholerae strain A1552

70.157

96.954

0.68