Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HK88_RS12625 Genome accession   NC_021823
Coordinates   2482724..2483260 (+) Length   178 a.a.
NCBI ID   WP_003721668.1    Uniprot ID   A0A0E0USV6
Organism   Listeria monocytogenes     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2477724..2488260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK88_RS12600 (M642_12785) aguA 2478115..2479224 (+) 1110 WP_003732185.1 agmatine deiminase -
  HK88_RS12605 (M642_12790) - 2479241..2480020 (+) 780 WP_003721664.1 MurR/RpiR family transcriptional regulator -
  HK88_RS12610 (M642_12795) - 2480125..2480784 (+) 660 WP_003721665.1 DedA family protein -
  HK88_RS12615 (M642_12800) arcA 2480864..2482096 (+) 1233 WP_014601564.1 arginine deiminase -
  HK88_RS12620 (M642_12805) rpsF 2482375..2482668 (+) 294 WP_003721667.1 30S ribosomal protein S6 -
  HK88_RS12625 (M642_12810) ssbA 2482724..2483260 (+) 537 WP_003721668.1 single-stranded DNA-binding protein Machinery gene
  HK88_RS12630 (M642_12815) rpsR 2483304..2483543 (+) 240 WP_003721669.1 30S ribosomal protein S18 -
  HK88_RS12635 (M642_12820) - 2483697..2484308 (+) 612 WP_009924128.1 PepSY domain-containing protein -
  HK88_RS12640 (M642_12825) - 2484565..2485179 (+) 615 WP_003727551.1 accessory gene regulator ArgB-like protein -
  HK88_RS12645 (M642_12830) - 2485163..2485324 (+) 162 WP_003721672.1 cyclic lactone autoinducer peptide -
  HK88_RS12650 (M642_12835) - 2485420..2486715 (+) 1296 WP_003721673.1 sensor histidine kinase -
  HK88_RS12655 (M642_12840) - 2486734..2487462 (+) 729 WP_003721674.1 LytR/AlgR family response regulator transcription factor -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19493.14 Da        Isoelectric Point: 4.7306

>NTDB_id=60114 HK88_RS12625 WP_003721668.1 2482724..2483260(+) (ssbA) [Listeria monocytogenes]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNND
PFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=60114 HK88_RS12625 WP_003721668.1 2482724..2483260(+) (ssbA) [Listeria monocytogenes]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGCACTTTCACTAACCAACAAGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCGGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCGGGCGTTGATGGCCGTGTTCAAACTCGT
AATTACGAGGGAAACGACGGTAAACGTGTTTATGTGACTGAAATTGTAGCAGAGAGTGTTCAATTCCTTGAACCGCGTAA
TTCTAATGGCGGTGGCGGAAATAACTATCAAAGTGGCAATAACAACAATAATTACAATAGCGGTGGAAATAACTTCGGAC
AAGCACCTACAAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAATAATGAT
CCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0USV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.539

100

0.685
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.556
  ssb Glaesserella parasuis strain SC1401

35.484

100

0.371
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

59.551

0.365

Multiple sequence alignment