Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HU826_RS01540 Genome accession   NZ_CP082280
Coordinates   318207..318737 (+) Length   176 a.a.
NCBI ID   WP_058610810.1    Uniprot ID   -
Organism   Enterobacter cancerogenus strain HAEC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 313207..323737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU826_RS01520 (HU826_01520) aphA 313536..314249 (+) 714 WP_058610813.1 acid phosphatase AphA -
  HU826_RS01525 (HU826_01525) - 314362..314778 (+) 417 WP_058610812.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HU826_RS01530 (HU826_01530) - 314781..315134 (+) 354 WP_006177468.1 MmcQ/YjbR family DNA-binding protein -
  HU826_RS01535 (HU826_01535) uvrA 315135..317960 (-) 2826 WP_058610811.1 excinuclease ABC subunit UvrA -
  HU826_RS01540 (HU826_01540) ssb 318207..318737 (+) 531 WP_058610810.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HU826_RS01545 (HU826_01545) - 318782..320308 (-) 1527 WP_058610809.1 EAL domain-containing protein -
  HU826_RS01550 (HU826_01550) - 320320..321084 (-) 765 WP_058610808.1 EAL domain-containing protein -
  HU826_RS01555 (HU826_01555) - 321151..322656 (-) 1506 WP_081047604.1 sensor domain-containing diguanylate cyclase -
  HU826_RS01560 (HU826_01560) - 323134..323382 (-) 249 WP_006177462.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18819.84 Da        Isoelectric Point: 5.2456

>NTDB_id=600976 HU826_RS01540 WP_058610810.1 318207..318737(+) (ssb) [Enterobacter cancerogenus strain HAEC1]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=600976 HU826_RS01540 WP_058610810.1 318207..318737(+) (ssb) [Enterobacter cancerogenus strain HAEC1]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACGTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAATATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACTGAAGTGGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGCCAGAACCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCACAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGGCCGCACCG
GCACCGTCTAACGAACCGCCAATGGACTTCGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472