Detailed information NTG0600962

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: K7I17_RS17720
• Genome accession: NZ_CP082279
• Coordinates: 3425929..3426618 (-)
• Length: 229 a.a.
• NCBI ID: WP_198315882.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Bam1
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3420929..3431618

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K7I17_RS17685 (K7I17_17685)	fliW	3421019..3421450 (-)	432	WP_007407475.1	flagellar assembly protein FliW	-
K7I17_RS17690 (K7I17_17690)	-	3421480..3422049 (-)	570	WP_014471091.1	DUF6470 family protein	-
K7I17_RS17695 (K7I17_17695)	flgL	3422141..3423058 (-)	918	WP_013353778.1	flagellar hook-associated protein FlgL	-
K7I17_RS17700 (K7I17_17700)	flgK	3423070..3424587 (-)	1518	WP_014471092.1	flagellar hook-associated protein FlgK	-
K7I17_RS17705 (K7I17_17705)	-	3424603..3425085 (-)	483	WP_013353780.1	flagellar protein FlgN	-
K7I17_RS17710 (K7I17_17710)	flgM	3425100..3425366 (-)	267	WP_013353781.1	flagellar biosynthesis anti-sigma factor FlgM	-
K7I17_RS17715 (K7I17_17715)	-	3425436..3425855 (-)	420	WP_013353782.1	TIGR03826 family flagellar region protein	-
K7I17_RS17720 (K7I17_17720)	comFC	3425929..3426618 (-)	690	WP_198315882.1	ComF family protein	Machinery gene
K7I17_RS17725 (K7I17_17725)	-	3426624..3426908 (-)	285	WP_013353784.1	late competence development ComFB family protein	-
K7I17_RS17730 (K7I17_17730)	comFA	3426967..3428352 (-)	1386	WP_013353785.1	DEAD/DEAH box helicase	Machinery gene
K7I17_RS17735 (K7I17_17735)	-	3428459..3429307 (-)	849	WP_013353786.1	DegV family protein	-
K7I17_RS17740 (K7I17_17740)	degU	3429404..3430093 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
K7I17_RS17745 (K7I17_17745)	degS	3430170..3431333 (-)	1164	WP_013353787.1	two-component sensor histidine kinase DegS	Regulator

Sequence

Protein

• Length: 229 a.a.
• Molecular weight: 25295.06 Da
• Isoelectric Point: 8.6865

>NTDB_id=600962 K7I17_RS17720 WP_198315882.1 3425929..3426618(-) (comFC) [Bacillus amyloliquefaciens strain Bam1]
MNCLLCDSPISRSLTWSSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNKKCADCMARESKTEQRFLLRQNRSVF
LYNDAMKDSLARFKFRGDTKIIQTFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAGALLTAGKALSVSSFTLIRS

Nucleotide

• Length: 690 bp

>NTDB_id=600962 K7I17_RS17720 WP_198315882.1 3425929..3426618(-) (comFC) [Bacillus amyloliquefaciens strain Bam1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGATCACTGACTTGGAGTTCTCTATTTTCTCTGGCGCCGGAGCAAGA
GGTATGCAGCGCATGCAGCAATCAATTTGAAAAAATCGAAGGCCCCGTGTGCAGTTTATGCGGAAGGCCTCAGCAGTCAA
ACAAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCGGTTTTT
TTGTATAATGATGCAATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATACGAAAATCATTCAAACATTTGAACG
TGATTTTACTGCCGGCTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGC
TGGCGGAGCGCGGATTTAATCAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGGAGCTCTGCTGA
CAGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (171-227)

• Double zinc ribbon domain (DZR_2) (2-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	59.471	99.127	0.59
comFC/cflB	Streptococcus mitis NCTC 12261	36.245	100	0.362
comFC/cflB	Streptococcus pneumoniae Rx1	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae D39	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae R6	35.931	100	0.362