Detailed information NTG0600890

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: K7B13_RS17550
• Genome accession: NZ_CP082278
• Coordinates: 3414872..3416035 (-)
• Length: 387 a.a.
• NCBI ID: WP_065982454.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain 35M
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3409872..3421035

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K7B13_RS17520 (K7B13_17520)	-	3410138..3410557 (-)	420	WP_212099487.1	TIGR03826 family flagellar region protein	-
K7B13_RS17525 (K7B13_17525)	comFC	3410631..3411320 (-)	690	WP_196769352.1	double zinc ribbon domain-containing protein	Machinery gene
K7B13_RS17530 (K7B13_17530)	-	3411326..3411610 (-)	285	WP_013353784.1	late competence development ComFB family protein	-
K7B13_RS17535 (K7B13_17535)	comFA	3411669..3413054 (-)	1386	WP_212099490.1	DEAD/DEAH box helicase	Machinery gene
K7B13_RS17540 (K7B13_17540)	-	3413161..3414009 (-)	849	WP_212099493.1	DegV family protein	-
K7B13_RS17545 (K7B13_17545)	degU	3414106..3414795 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
K7B13_RS17550 (K7B13_17550)	degS	3414872..3416035 (-)	1164	WP_065982454.1	two-component sensor histidine kinase DegS	Regulator
K7B13_RS17555 (K7B13_17555)	-	3416258..3416905 (+)	648	WP_212099496.1	YigZ family protein	-
K7B13_RS17560 (K7B13_17560)	-	3416910..3418091 (+)	1182	WP_065982456.1	LCP family protein	-
K7B13_RS17565 (K7B13_17565)	-	3418192..3419268 (-)	1077	WP_060964142.1	glycosyltransferase family 4 protein	-
K7B13_RS17570 (K7B13_17570)	-	3419401..3420597 (-)	1197	WP_212099500.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45028.81 Da
• Isoelectric Point: 6.8617

>NTDB_id=600890 K7B13_RS17550 WP_065982454.1 3414872..3416035(-) (degS) [Bacillus amyloliquefaciens strain 35M]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDINEAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=600890 K7B13_RS17550 WP_065982454.1 3414872..3416035(-) (degS) [Bacillus amyloliquefaciens strain 35M]
ATGAATAAAACGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTCGAAGTACATACCCGGCACGCAAGAAACCGCTTGTCGGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTCCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTGGGGCTTCTGCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATCGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGCCCGGCTCAAATGCTGGCAAATGTCATGATGAGATCGGAATTGATAGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGCTTTCAGGAAATCAGAAATCTTCGCCAGAATGTGCGGAATGCTCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTGAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACTGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGCTTTGATATCAATGAGGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951