Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NDQ69_RS02340 Genome accession   NZ_CP098548
Coordinates   453359..453970 (+) Length   203 a.a.
NCBI ID   WP_033911077.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9343     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448359..458970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ69_RS02315 (NDQ69_02300) - 448820..449401 (-) 582 WP_003690895.1 superoxide dismutase -
  NDQ69_RS02320 (NDQ69_02305) dnaB 449565..450971 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDQ69_RS02325 (NDQ69_02310) pilH 451125..451790 (+) 666 WP_229931479.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ69_RS02330 (NDQ69_02315) pilV 451822..452433 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Regulator
  NDQ69_RS02335 (NDQ69_02320) pilJ 452430..453380 (+) 951 WP_003699627.1 PilW family protein Machinery gene
  NDQ69_RS02340 (NDQ69_02325) pilK 453359..453970 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDQ69_RS02345 (NDQ69_02330) pilL 453972..454445 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  NDQ69_RS02350 (NDQ69_02335) - 454515..454823 (-) 309 WP_025456177.1 AzlD family protein -
  NDQ69_RS02355 (NDQ69_02340) - 454820..455530 (-) 711 Protein_462 AzlC family ABC transporter permease -
  NDQ69_RS02360 (NDQ69_02345) dut 455696..456148 (+) 453 WP_003699637.1 dUTP diphosphatase -
  NDQ69_RS02365 (NDQ69_02350) dapC 456224..457411 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  NDQ69_RS02370 (NDQ69_02355) yaaA 457567..458346 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22068.97 Da        Isoelectric Point: 7.5813

>NTDB_id=600888 NDQ69_RS02340 WP_033911077.1 453359..453970(+) (pilK) [Neisseria gonorrhoeae strain 9343]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTASVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=600888 NDQ69_RS02340 WP_033911077.1 453359..453970(+) (pilK) [Neisseria gonorrhoeae strain 9343]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCTACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGCACGGCAAGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956