Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   K7B13_RS17525 Genome accession   NZ_CP082278
Coordinates   3410631..3411320 (-) Length   229 a.a.
NCBI ID   WP_196769352.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 35M     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3405631..3416320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS17490 (K7B13_17490) fliW 3405722..3406153 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  K7B13_RS17495 (K7B13_17495) - 3406183..3406752 (-) 570 WP_115996791.1 DUF6470 family protein -
  K7B13_RS17500 (K7B13_17500) flgL 3406843..3407760 (-) 918 WP_115996789.1 flagellar hook-associated protein FlgL -
  K7B13_RS17505 (K7B13_17505) flgK 3407772..3409289 (-) 1518 WP_065982450.1 flagellar hook-associated protein FlgK -
  K7B13_RS17510 (K7B13_17510) - 3409305..3409787 (-) 483 WP_013353780.1 flagellar protein FlgN -
  K7B13_RS17515 (K7B13_17515) flgM 3409802..3410068 (-) 267 WP_212099484.1 flagellar biosynthesis anti-sigma factor FlgM -
  K7B13_RS17520 (K7B13_17520) - 3410138..3410557 (-) 420 WP_212099487.1 TIGR03826 family flagellar region protein -
  K7B13_RS17525 (K7B13_17525) comFC 3410631..3411320 (-) 690 WP_196769352.1 double zinc ribbon domain-containing protein Machinery gene
  K7B13_RS17530 (K7B13_17530) - 3411326..3411610 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  K7B13_RS17535 (K7B13_17535) comFA 3411669..3413054 (-) 1386 WP_212099490.1 DEAD/DEAH box helicase Machinery gene
  K7B13_RS17540 (K7B13_17540) - 3413161..3414009 (-) 849 WP_212099493.1 DegV family protein -
  K7B13_RS17545 (K7B13_17545) degU 3414106..3414795 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  K7B13_RS17550 (K7B13_17550) degS 3414872..3416035 (-) 1164 WP_065982454.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25365.06 Da        Isoelectric Point: 8.2933

>NTDB_id=600887 K7B13_RS17525 WP_196769352.1 3410631..3411320(-) (comFC) [Bacillus amyloliquefaciens strain 35M]
MNCLLCDSPISRSLTWRSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNEKCADCMARESKTEQRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFTAGFKAAYPANTHILVPIPLSPERLADRGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSGEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEALLTAGKALSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=600887 K7B13_RS17525 WP_196769352.1 3410631..3411320(-) (comFC) [Bacillus amyloliquefaciens strain 35M]
CTGAATTGTTTATTGTGTGACTCCCCAATTTCAAGATCACTGACTTGGAGATCTCTATTTTCTCTGGCGCCGGAGCAAGA
GGTATGCAGCGCATGCAGCAATCAATTTGAAAAAATTGAAGGCCCCGTATGCAGTTTATGCGGAAGGCCTCAGCAGTCAA
ACGAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCGGTTTAT
TTGTATAATGATGCAATGAAGGATTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGATTTTACTGCCGGCTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGC
TGGCGGACCGCGGATTCAATCAATCCGAGCTGCTGGCCTCCCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCAGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTCTCCGGAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGC
AGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTTCATCAAGCTGCCGAAGCTCTGCTGA
CTGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603