Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   NDQ69_RS02345 Genome accession   NZ_CP098548
Coordinates   453972..454445 (+) Length   157 a.a.
NCBI ID   WP_172760650.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9343     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448972..459445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ69_RS02320 (NDQ69_02305) dnaB 449565..450971 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDQ69_RS02325 (NDQ69_02310) pilH 451125..451790 (+) 666 WP_229931479.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ69_RS02330 (NDQ69_02315) pilV 451822..452433 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Regulator
  NDQ69_RS02335 (NDQ69_02320) pilJ 452430..453380 (+) 951 WP_003699627.1 PilW family protein Machinery gene
  NDQ69_RS02340 (NDQ69_02325) pilK 453359..453970 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDQ69_RS02345 (NDQ69_02330) pilL 453972..454445 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  NDQ69_RS02350 (NDQ69_02335) - 454515..454823 (-) 309 WP_025456177.1 AzlD family protein -
  NDQ69_RS02355 (NDQ69_02340) - 454820..455530 (-) 711 Protein_462 AzlC family ABC transporter permease -
  NDQ69_RS02360 (NDQ69_02345) dut 455696..456148 (+) 453 WP_003699637.1 dUTP diphosphatase -
  NDQ69_RS02365 (NDQ69_02350) dapC 456224..457411 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  NDQ69_RS02370 (NDQ69_02355) yaaA 457567..458346 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17429.25 Da        Isoelectric Point: 9.7225

>NTDB_id=600889 NDQ69_RS02345 WP_172760650.1 453972..454445(+) (pilL) [Neisseria gonorrhoeae strain 9343]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPLDDNQTIKTKLEIFVSGYKM
NPKIAKKYSVSVAFANTEKPRVYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASAQAYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=600889 NDQ69_RS02345 WP_172760650.1 453972..454445(+) (pilL) [Neisseria gonorrhoeae strain 9343]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGACCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGTATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAGGCCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.083

100

0.911
  pilX Neisseria meningitidis 8013

88.535

100

0.885