Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   K6I41_RS01675 Genome accession   NZ_CP082274
Coordinates   360218..360700 (+) Length   160 a.a.
NCBI ID   WP_111855056.1    Uniprot ID   A0AAJ1PED1
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355218..365700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS01665 (K6I41_01665) pilX 355530..356339 (+) 810 WP_216070609.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  K6I41_RS01670 (K6I41_01670) pilY1 356351..360205 (+) 3855 WP_250375095.1 PilC/PilY family type IV pilus protein Machinery gene
  K6I41_RS01675 (K6I41_01675) pilY2 360218..360700 (+) 483 WP_111855056.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  K6I41_RS01680 (K6I41_01680) pilE 360697..361122 (+) 426 WP_250375096.1 type IV pilin protein Machinery gene
  K6I41_RS01685 (K6I41_01685) rpsP 361270..361521 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  K6I41_RS01690 (K6I41_01690) rimM 361542..362090 (+) 549 WP_198307888.1 ribosome maturation factor RimM -
  K6I41_RS01695 (K6I41_01695) trmD 362133..362888 (+) 756 WP_151768238.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  K6I41_RS01700 (K6I41_01700) rplS 363108..363476 (+) 369 WP_004789772.1 50S ribosomal protein L19 -
  K6I41_RS01705 (K6I41_01705) - 363530..364471 (-) 942 WP_192836324.1 triacylglycerol lipase -
  K6I41_RS01710 (K6I41_01710) - 364588..365619 (-) 1032 WP_250375097.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17332.57 Da        Isoelectric Point: 7.6282

>NTDB_id=600750 K6I41_RS01675 WP_111855056.1 360218..360700(+) (pilY2) [Acinetobacter sp. AS23]
MNKYYILRFNQGFTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLEQHKSKNFTYRGFTTTSVTLP
QGGYTIAISDDTTTGNLLTNGAANGQTWVIKATTTDPGNINFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=600750 K6I41_RS01675 WP_111855056.1 360218..360700(+) (pilY2) [Acinetobacter sp. AS23]
ATGAATAAGTACTACATTTTACGGTTCAATCAGGGTTTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACTGCTTCTGCTGCCAAAGGTGAAATTCTAA
AATTGGCGGAACAATTGGAACAGCATAAATCCAAGAACTTTACCTATAGAGGATTTACGACCACATCTGTAACGTTGCCA
CAGGGTGGTTATACGATTGCAATTAGTGATGATACGACGACAGGAAATTTATTGACAAATGGTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATCCAGGAAACATTAACTTTATTGCTAAAAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGGACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-124)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

41.279

100

0.444