Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   K6I41_RS01680 Genome accession   NZ_CP082274
Coordinates   360697..361122 (+) Length   141 a.a.
NCBI ID   WP_250375096.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355697..366122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS01670 (K6I41_01670) pilY1 356351..360205 (+) 3855 WP_250375095.1 PilC/PilY family type IV pilus protein Machinery gene
  K6I41_RS01675 (K6I41_01675) pilY2 360218..360700 (+) 483 WP_111855056.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  K6I41_RS01680 (K6I41_01680) pilE 360697..361122 (+) 426 WP_250375096.1 type IV pilin protein Machinery gene
  K6I41_RS01685 (K6I41_01685) rpsP 361270..361521 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  K6I41_RS01690 (K6I41_01690) rimM 361542..362090 (+) 549 WP_198307888.1 ribosome maturation factor RimM -
  K6I41_RS01695 (K6I41_01695) trmD 362133..362888 (+) 756 WP_151768238.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  K6I41_RS01700 (K6I41_01700) rplS 363108..363476 (+) 369 WP_004789772.1 50S ribosomal protein L19 -
  K6I41_RS01705 (K6I41_01705) - 363530..364471 (-) 942 WP_192836324.1 triacylglycerol lipase -
  K6I41_RS01710 (K6I41_01710) - 364588..365619 (-) 1032 WP_250375097.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15252.48 Da        Isoelectric Point: 7.8471

>NTDB_id=600751 K6I41_RS01680 WP_250375096.1 360697..361122(+) (pilE) [Acinetobacter sp. AS23]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKMVHNRYPSNATITSIYGSNVSPQQG
QALYNLAFANITDSSWVLTATPIANTSQAGDGIICLNDQGQKFWAKGAANCVLSAASNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=600751 K6I41_RS01680 WP_250375096.1 360697..361122(+) (pilE) [Acinetobacter sp. AS23]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAATGGTTCACAATCGTTACCCATCAAATGCTACCATTACTTCGATTTATGGCTCAAATGTAAGTCCTCAACAAGGC
CAAGCCTTATATAACTTAGCTTTTGCCAACATAACTGATTCAAGCTGGGTGTTAACTGCTACGCCTATTGCTAATACTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGACAAAAATTTTGGGCAAAAGGTGCAGCGAATTGTGTGTTAT
CTGCCGCATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

87.234

100

0.872
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518