Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilY1   Type   Machinery gene
Locus tag   K6I41_RS01670 Genome accession   NZ_CP082274
Coordinates   356351..360205 (+) Length   1284 a.a.
NCBI ID   WP_250375095.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 351351..365205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS01640 (K6I41_01640) gmk 351629..352258 (-) 630 WP_004789787.1 guanylate kinase -
  K6I41_RS01645 (K6I41_01645) ispH 352381..353331 (+) 951 WP_013196710.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K6I41_RS01650 (K6I41_01650) fimU 353502..353975 (+) 474 WP_192454566.1 GspH/FimT family pseudopilin Machinery gene
  K6I41_RS01655 (K6I41_01655) pilV 353969..354529 (+) 561 WP_250375093.1 type IV pilus modification protein PilV Machinery gene
  K6I41_RS01660 (K6I41_01660) pilW 354529..355533 (+) 1005 WP_250375094.1 PilW family protein Machinery gene
  K6I41_RS01665 (K6I41_01665) pilX 355530..356339 (+) 810 WP_216070609.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  K6I41_RS01670 (K6I41_01670) pilY1 356351..360205 (+) 3855 WP_250375095.1 PilC/PilY family type IV pilus protein Machinery gene
  K6I41_RS01675 (K6I41_01675) pilY2 360218..360700 (+) 483 WP_111855056.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  K6I41_RS01680 (K6I41_01680) pilE 360697..361122 (+) 426 WP_250375096.1 type IV pilin protein Machinery gene
  K6I41_RS01685 (K6I41_01685) rpsP 361270..361521 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  K6I41_RS01690 (K6I41_01690) rimM 361542..362090 (+) 549 WP_198307888.1 ribosome maturation factor RimM -
  K6I41_RS01695 (K6I41_01695) trmD 362133..362888 (+) 756 WP_151768238.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  K6I41_RS01700 (K6I41_01700) rplS 363108..363476 (+) 369 WP_004789772.1 50S ribosomal protein L19 -
  K6I41_RS01705 (K6I41_01705) - 363530..364471 (-) 942 WP_192836324.1 triacylglycerol lipase -

Sequence


Protein


Download         Length: 1284 a.a.        Molecular weight: 137756.92 Da        Isoelectric Point: 7.5993

>NTDB_id=600749 K6I41_RS01670 WP_250375095.1 356351..360205(+) (pilY1) [Acinetobacter sp. AS23]
MKLKLNNFKPNNLWYAICSSSVAFTWLVTSSVAQASDLQIYASPTAGKKTIVMMLDTSGSMTSNSYNENRLAMLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQILVAAAPLGDASTLNTVGSQRYKLKQAVANLSAGGSTPSAHAYAEAAAYLM
GTSTYSEANYLIRKDSYIKRVRKSDNRTEYTYCTNYRDSQIDTANLWQPCRSSSYWSNWSTSNPGVATATAYNTSSDSSY
SYTYYYTTFNYAIANTDSGIPKSKTNDTTSNPNIVLDRNASNLDAIYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTDTR
SATVMSTALGSTLGANFSCSGGLSNTSSDSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSEDVKNACRLS
SRTQSNRKSDDNCSPNQPNNAVASPGYGNGGFFPTQSAQGVTNSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEY
GYLRALEPNPANTYLTWRGNLKKYHVVLSGTNAGAFEANTGGLVYNANGAFRADTKDYWNSSNYNDGGKVFLGGSYAKVP
LPIAGQNETRDEEGNITKYYYAVQTKIRNLFTDVSAVAADGSLTKISTSGTNLLRIPAAPATGANPFDSASNTASYILGK
FDASTGQDILKTFPISLKLKILNYLGYSTDISATTLPSSLVTSNAPYLSMGGSIHSLPVQLTYNGTLDENGNLTSAREQS
ILYGTMEGGLHIVDASTGVEQMAFVPADILNDPVASRALVVGQSDTTAPAHGMDGAWVSDPAYSITTTGSGSSAVSKVTA
KQMNIYGGMRMGGSSYYGLNVLNPASPKLLFRVGADQTDYSRMGQSWSKPVLANIRYNGVIKRVMIVGGGYDQCYENPNI
TLSNSCFTNGKAKGNAVYIIDAKTGERLWWTSDTGSNIDNSNMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRIDLN
NNQTKTNSTYSSFGIRVVRLANLATNDSNYDASNDYTNGNAPRFYEPPTVTIHDYGIRTFITVGIASGDRSTPLDVYPLT
GREGMSPSSALSGRPVNNVYGIIDKDFIKKNLMSLTDSQLETKDITRSALRKNPQILRSGETRVAQIFFPNSGTGQGGWY
RSLSSMSDGTEKANNSFRIKGGLKAFEEPMAVTGTLIVPVYDPQGTGIVAADPCLPRVVGETDQQTYCLPFGACLNSDGS
IDQNKENGNGFKTQTGSNCPAGASECNINVIGAGIRSVTFVPTEDNPPATNSCGKLKLSGNEQGTGQWQCTSHLVPTRWY
ERYR

Nucleotide


Download         Length: 3855 bp        

>NTDB_id=600749 K6I41_RS01670 WP_250375095.1 356351..360205(+) (pilY1) [Acinetobacter sp. AS23]
GTGAAACTAAAATTGAATAATTTTAAGCCAAATAATTTATGGTATGCCATCTGTTCGAGCTCGGTTGCTTTTACATGGCT
AGTGACAAGTTCTGTTGCGCAGGCCAGTGATTTACAGATTTATGCTTCACCTACAGCTGGTAAAAAAACTATTGTAATGA
TGTTAGATACTTCAGGGAGTATGACATCTAATAGTTATAACGAAAATCGTTTGGCTATGCTTAAAAATGGTATGAATGCT
TTTTTAGCCAGCAATAATCCTGTTTTAAATGATACTCGTGTGGGTTTAGGTAATTTCTCTGCAAATGGTGATAGTCGAAG
TGGGCAAATTTTGGTGGCTGCTGCTCCTTTAGGAGATGCAAGTACTTTAAATACGGTGGGGTCTCAGCGTTATAAATTAA
AACAGGCAGTTGCAAATTTATCTGCTGGTGGGTCAACACCTTCAGCACATGCTTATGCAGAAGCTGCTGCTTATTTGATG
GGTACATCGACTTATTCAGAGGCGAATTACCTTATTCGCAAAGATAGTTATATAAAACGTGTACGAAAATCTGATAATAG
AACAGAATATACATATTGTACGAATTATCGCGATTCACAAATTGATACAGCAAATTTATGGCAACCTTGTCGCTCTAGTA
GCTATTGGAGTAACTGGTCAACCTCTAATCCAGGTGTAGCCACGGCCACAGCCTATAATACTTCGTCTGATTCAAGTTAT
TCTTATACTTATTACTACACCACTTTTAATTATGCTATAGCAAACACTGATAGTGGTATTCCAAAATCAAAAACCAATGA
TACGACAAGCAATCCGAATATTGTTTTAGATAGAAATGCTTCTAACTTAGATGCCATTTACCAATCTCCTTTACCGGCAG
TGGCCAATCGTCAAAGTTGTGATGGGCAGGGCATTTACTTTTTATCAGATGGTGAGCCGAACAATACAACAGATACACGC
TCGGCAACAGTAATGTCGACGGCCCTAGGTAGCACTCTGGGAGCAAATTTCAGTTGCTCTGGGGGACTTTCTAATACTTC
ATCAGATTCTGGTTGGGCTTGTATGGGGGAGTTTGCTAAACGACTATTTGATAAAACAAAAAACCCTGCTGGAGTTTCTA
TTCAAACAGCATTTGTTGGTTTTGGTAGTGATTTTTCTAGCTTGAGTTCGGAAGATGTGAAAAATGCCTGTCGTCTAAGT
TCAAGAACCCAATCTAACCGTAAAAGTGATGATAATTGTTCACCTAATCAACCAAACAATGCAGTTGCCTCTCCAGGATA
TGGAAACGGTGGTTTTTTTCCTACCCAAAGTGCTCAAGGGGTAACGAATAGCGTTATTGCGTTTATCAATAATTTAGATA
AGGTCCCTTTAGAACCTTTAACAACAGGTGCAATTTCTGTTCCTTACGATGCTTTAAATCCTAAAAATTTACAAGAATAT
GGTTATTTACGTGCTTTGGAGCCTAATCCTGCCAATACGTATTTAACATGGAGAGGAAATCTAAAGAAATATCATGTTGT
TTTATCAGGAACAAATGCTGGGGCTTTTGAAGCTAACACGGGTGGATTGGTTTACAACGCAAATGGTGCATTTAGAGCAG
ATACAAAAGATTACTGGAATAGCTCGAATTACAATGATGGCGGAAAAGTCTTTTTAGGTGGTTCGTATGCAAAAGTTCCT
TTACCAATTGCTGGACAAAATGAAACACGTGATGAAGAAGGAAATATCACAAAATATTATTACGCAGTACAAACTAAAAT
CCGCAACTTATTTACTGATGTTTCCGCTGTTGCAGCGGATGGTAGCTTAACGAAAATATCGACTTCTGGAACTAATTTAC
TAAGAATTCCTGCTGCTCCTGCTACTGGAGCTAATCCTTTTGATAGCGCAAGTAATACAGCAAGTTATATATTAGGAAAA
TTTGATGCTTCAACTGGACAAGATATTTTAAAAACTTTCCCTATTAGCTTGAAATTAAAAATATTAAATTATCTAGGTTA
CTCAACTGATATTAGCGCTACGACTTTACCTTCGTCATTAGTTACATCGAATGCACCATATTTATCGATGGGTGGTAGTA
TTCATTCTTTACCAGTACAGCTTACCTATAATGGAACATTAGATGAAAATGGGAATTTAACATCTGCGCGTGAACAATCC
ATTCTCTATGGAACGATGGAAGGTGGTCTGCATATTGTGGATGCCTCAACTGGTGTAGAACAAATGGCTTTCGTCCCTGC
TGATATATTAAATGATCCAGTTGCATCAAGAGCTTTAGTTGTTGGGCAAAGTGATACTACAGCTCCTGCTCACGGTATGG
ATGGGGCTTGGGTATCTGATCCTGCATATAGTATTACTACAACGGGAAGCGGTAGCTCAGCAGTATCAAAAGTAACTGCA
AAGCAAATGAATATTTATGGTGGCATGCGAATGGGGGGCAGCAGCTATTATGGCTTAAATGTCTTAAATCCTGCTTCACC
TAAGCTTCTATTTAGAGTGGGAGCTGATCAAACTGATTATAGTCGTATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAA
ATATACGTTATAACGGGGTTATTAAACGCGTCATGATTGTTGGTGGTGGCTATGACCAATGTTATGAAAACCCGAATATT
ACCTTGAGCAACTCTTGCTTTACGAATGGAAAAGCAAAAGGGAATGCTGTTTATATTATTGATGCTAAAACTGGGGAGCG
CTTATGGTGGACTAGTGATACAGGCTCAAATATAGATAACTCTAATATGAAGCACAGTATTGTTAGTCGCATTAGTACTT
TAGATCGAGATGCTGATGGTTTAGTCGACCATTTATATTTTGGCGATTTAGGTGGGCAAATTTTCCGTATCGATCTTAAT
AATAACCAGACAAAAACAAATTCAACTTATAGCAGTTTCGGTATTAGAGTTGTTCGATTAGCCAATTTAGCGACGAATGA
CTCAAATTATGATGCTTCGAACGATTATACAAATGGGAATGCACCACGGTTTTATGAACCGCCTACAGTCACTATACATG
ATTATGGTATCCGTACTTTTATTACTGTAGGTATTGCTTCAGGTGACCGCAGTACACCGTTAGATGTTTATCCACTTACG
GGACGTGAGGGAATGTCACCTAGCTCGGCATTAAGCGGAAGACCTGTAAACAATGTCTATGGAATTATTGATAAAGACTT
TATCAAAAAGAATTTGATGTCTTTAACTGATAGCCAACTTGAAACAAAAGATATTACTCGATCAGCTCTTAGAAAAAATC
CACAAATTTTAAGATCTGGAGAAACACGAGTAGCCCAAATTTTCTTCCCAAACAGTGGGACGGGGCAAGGTGGTTGGTAT
CGCTCACTTTCTAGTATGAGCGATGGCACAGAGAAAGCTAATAATAGTTTCCGTATTAAAGGTGGACTAAAAGCTTTTGA
AGAGCCTATGGCCGTTACGGGGACTTTAATTGTGCCTGTTTATGACCCGCAGGGAACAGGTATTGTAGCGGCAGACCCAT
GTTTACCACGGGTAGTAGGGGAAACGGACCAGCAGACTTACTGCCTACCATTTGGCGCCTGTCTTAACTCTGATGGATCA
ATTGATCAGAATAAAGAGAATGGCAATGGATTTAAAACACAAACGGGTAGTAACTGCCCAGCAGGGGCCTCTGAATGTAA
TATAAACGTCATAGGTGCAGGTATTCGTAGCGTAACATTTGTACCAACGGAGGATAACCCACCTGCGACAAATAGTTGTG
GGAAATTAAAGCTGTCTGGTAATGAGCAAGGGACGGGACAGTGGCAATGTACGAGTCATTTAGTTCCTACGCGTTGGTAT
GAGCGTTATCGCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

83.566

100

0.84