Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   K6I41_RS01660 Genome accession   NZ_CP082274
Coordinates   354529..355533 (+) Length   334 a.a.
NCBI ID   WP_250375094.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349529..360533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS01630 (K6I41_01630) - 351108..351212 (-) 105 Protein_311 hypothetical protein -
  K6I41_RS01635 (K6I41_01635) rpoZ 351278..351556 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  K6I41_RS01640 (K6I41_01640) gmk 351629..352258 (-) 630 WP_004789787.1 guanylate kinase -
  K6I41_RS01645 (K6I41_01645) ispH 352381..353331 (+) 951 WP_013196710.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K6I41_RS01650 (K6I41_01650) fimU 353502..353975 (+) 474 WP_192454566.1 GspH/FimT family pseudopilin Machinery gene
  K6I41_RS01655 (K6I41_01655) pilV 353969..354529 (+) 561 WP_250375093.1 type IV pilus modification protein PilV Machinery gene
  K6I41_RS01660 (K6I41_01660) pilW 354529..355533 (+) 1005 WP_250375094.1 PilW family protein Machinery gene
  K6I41_RS01665 (K6I41_01665) pilX 355530..356339 (+) 810 WP_216070609.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  K6I41_RS01670 (K6I41_01670) pilY1 356351..360205 (+) 3855 WP_250375095.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 35610.22 Da        Isoelectric Point: 6.2218

>NTDB_id=600747 K6I41_RS01660 WP_250375094.1 354529..355533(+) (pilW) [Acinetobacter sp. AS23]
MAHSFFSGKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSHLQKANAEIQDSGIFGLEYIARDIRLLNYGNVINPIL
TDITPWGGVVLTGSTATNNDSVNFVPNVGTNTYIADALLSRGAGDSVSTVSNHWKGLSNIQNSSDTAVQSDQLTIQFIAP
TSMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAAAATAQPTTITGLGDAGQIVLPRIDHFHVLFGAK
NAAGNFAYYTIPQYRAAAQAARDATPSVMAPRILSIQISVLARSTNNAQNRAIDPAQSFLMLDQTVHASDNTTRFLRRVY
NVTIALRNAMGESL

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=600747 K6I41_RS01660 WP_250375094.1 354529..355533(+) (pilW) [Acinetobacter sp. AS23]
ATGGCTCACTCATTTTTTTCGGGGAAGCAACGAGGCTTTACATTAATTGAGCTTATGGTTGCATTGGCTTTAGGTCTGAT
TTTGGTGGCTGCAGCGACGCAATTATTTATTGGTGGACTTCTATCAAGCCACCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTCGGTCTGGAATATATTGCACGTGATATACGCCTTTTAAATTATGGAAATGTAATCAACCCGATATTA
ACTGATATCACCCCTTGGGGCGGCGTTGTATTAACTGGCTCAACAGCAACTAATAATGACAGTGTCAATTTTGTACCTAA
TGTTGGAACAAATACTTATATTGCTGATGCTTTATTAAGTCGTGGTGCTGGAGATAGCGTAAGTACTGTTAGCAACCATT
GGAAAGGCCTTTCAAATATACAGAACAGTTCAGACACCGCTGTGCAAAGTGATCAGTTGACGATTCAATTTATTGCTCCT
ACCTCTATGACCAATTGTGAGGGTGTGAATGTACTTGCAGGAGATTTAATTGTAGAGCGTTATTTTTTACGTCTTGATAG
TAATGGTAGTTCTCAACAAGATTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGCAGCCGCGACAGCTCAACCTA
CCACTATTACTGGCTTGGGTGACGCCGGGCAAATCGTATTACCGCGTATTGATCATTTTCATGTGTTATTTGGTGCAAAA
AATGCGGCTGGCAATTTTGCTTACTATACGATTCCCCAGTATCGAGCTGCTGCACAGGCTGCGCGAGATGCCACACCATC
TGTAATGGCACCGCGAATTCTTTCAATACAAATATCTGTACTAGCCCGTTCCACGAATAATGCTCAAAACAGAGCAATAG
ATCCTGCCCAGTCTTTTCTTATGTTAGATCAAACAGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGTGTTTAT
AACGTAACAATTGCTCTACGTAATGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-328)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.731

100

0.847