Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV/pilI   Type   Regulator
Locus tag   NDQ64_RS02660 Genome accession   NZ_CP098544
Coordinates   517868..518482 (+) Length   204 a.a.
NCBI ID   WP_260244353.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10296     
Function   repress natural transformation; antagonize ComP (predicted from homology)   
Competence regulation

Genomic Context

Location: 512868..523482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ64_RS02635 (NDQ64_02615) - 513366..513698 (+) 333 WP_003687908.1 hypothetical protein -
  NDQ64_RS02640 (NDQ64_02620) - 514028..514537 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDQ64_RS02645 (NDQ64_02625) - 514769..515350 (-) 582 WP_003690895.1 superoxide dismutase -
  NDQ64_RS02650 (NDQ64_02630) dnaB 515514..516917 (+) 1404 WP_012503477.1 replicative DNA helicase -
  NDQ64_RS11945 - 516911..517023 (-) 113 Protein_515 IS5/IS1182 family transposase -
  NDQ64_RS02655 (NDQ64_02635) pilH 517174..517836 (+) 663 WP_041421240.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ64_RS02660 (NDQ64_02640) pilV/pilI 517868..518482 (+) 615 WP_260244353.1 type IV pilus modification protein PilV Regulator
  NDQ64_RS02665 (NDQ64_02645) pilJ 518479..519438 (+) 960 WP_012503480.1 PilW family protein Machinery gene
  NDQ64_RS02670 (NDQ64_02650) pilK 519417..520028 (+) 612 WP_012503481.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDQ64_RS02675 (NDQ64_02655) pilL 520030..520503 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  NDQ64_RS02680 (NDQ64_02660) - 520573..520881 (-) 309 WP_003706588.1 AzlD family protein -
  NDQ64_RS02685 (NDQ64_02665) - 520878..521589 (-) 712 Protein_522 AzlC family ABC transporter permease -
  NDQ64_RS02690 (NDQ64_02670) dut 521755..522207 (+) 453 WP_003701071.1 dUTP diphosphatase -
  NDQ64_RS02695 (NDQ64_02675) dapC 522279..523466 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22112.04 Da        Isoelectric Point: 4.9673

>NTDB_id=600747 NDQ64_RS02660 WP_260244353.1 517868..518482(+) (pilV/pilI) [Neisseria gonorrhoeae strain 10296]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTGLYPPTPSGGDFKLNNNNLISKKDLAKAQLDRFDYELRNALPDAVAIHYAVCKDSSGGAPTLSGGTFSPNCDNKA
NGDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGHE

Nucleotide


Download         Length: 615 bp        

>NTDB_id=600747 NDQ64_RS02660 WP_260244353.1 517868..518482(+) (pilV/pilI) [Neisseria gonorrhoeae strain 10296]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACGGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACGGGGCTGTACCCCCCCACTCCCTCTGGCGGCGATTTCAAGCTTAATAATAATAATTTGATAAGTAA
GAAGGATTTGGCAAAAGCCCAGTTGGACAGGTTCGATTATGAATTGAGAAACGCCTTGCCGGATGCGGTAGCTATTCATT
ACGCCGTCTGCAAGGATTCGTCGGGTGGCGCGCCGACATTGTCCGGCGGTACTTTTTCTCCAAATTGCGATAATAAGGCA
AACGGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGT
GAGCGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCATGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV/pilI Neisseria gonorrhoeae MS11

90.686

100

0.907
  pilV Neisseria meningitidis 8013

84.615

100

0.863