Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6I41_RS00975 Genome accession   NZ_CP082274
Coordinates   218477..219067 (+) Length   196 a.a.
NCBI ID   WP_004789979.1    Uniprot ID   A0A372BPS0
Organism   Acinetobacter sp. AS23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 213477..224067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS00950 (K6I41_00950) - 213547..214353 (-) 807 WP_151827532.1 SDR family oxidoreductase -
  K6I41_RS00955 (K6I41_00955) - 214457..214828 (-) 372 WP_107880474.1 MerR family transcriptional regulator -
  K6I41_RS00960 (K6I41_00960) tenA 214894..215568 (-) 675 WP_250375042.1 thiaminase II -
  K6I41_RS00965 (K6I41_00965) - 215831..216913 (+) 1083 WP_005300706.1 DUF475 domain-containing protein -
  K6I41_RS00970 (K6I41_00970) - 217061..218425 (+) 1365 WP_250375043.1 MFS transporter -
  K6I41_RS00975 (K6I41_00975) ssb 218477..219067 (+) 591 WP_004789979.1 single-stranded DNA-binding protein Machinery gene
  K6I41_RS00980 (K6I41_00980) - 219109..219432 (-) 324 WP_111855172.1 AzlD domain-containing protein -
  K6I41_RS00985 (K6I41_00985) - 219429..220124 (-) 696 WP_250375742.1 AzlC family ABC transporter permease -
  K6I41_RS00990 (K6I41_00990) - 220193..220741 (+) 549 WP_151768128.1 XRE family transcriptional regulator -
  K6I41_RS00995 (K6I41_00995) - 221069..222511 (+) 1443 WP_151768127.1 amino acid permease -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21239.01 Da        Isoelectric Point: 6.4832

>NTDB_id=600739 K6I41_RS00975 WP_004789979.1 218477..219067(+) (ssb) [Acinetobacter sp. AS23]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDGRQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNNGGGYGSQ
GGFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=600739 K6I41_RS00975 WP_004789979.1 218477..219067(+) (ssb) [Acinetobacter sp. AS23]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GCTGACTCAATTTTCAATCGCGACAAGTGAAGCTTGGACCGATAAAACTTCAGGTGAGCGTAAAGAACAAACTGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGTGAAATTGCTCAGCAGTTCCTACGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGCACGCGTCAGTGGACTGATCAAAATGGTCAAGAGCGCTATACAACAGAAATTCGTGGCGAACAGATGCAAAT
GTTAGATGGTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAATGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGCCAAAACAATGGCGGTGGTTATGGTAGCCAA
GGTGGTTTCGGTAATGGTGGCAACAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCTGCGTCTGCACC
AGCTGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372BPS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.724

100

0.536
  ssb Vibrio cholerae strain A1552

44.776

100

0.459
  ssb Neisseria meningitidis MC58

37.688

100

0.383
  ssb Neisseria gonorrhoeae MS11

37.186

100

0.378