Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K4A81_RS20840 Genome accession   NZ_CP082262
Coordinates   4187546..4188064 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain BIM B-454D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4182546..4193064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4A81_RS20805 (K4A81_20805) - 4182573..4183904 (+) 1332 WP_101287665.1 MFS transporter -
  K4A81_RS20810 (K4A81_20810) - 4183936..4184316 (-) 381 WP_095060461.1 VOC family protein -
  K4A81_RS20815 (K4A81_20815) - 4184373..4185311 (-) 939 WP_103526394.1 LacI family DNA-binding transcriptional regulator -
  K4A81_RS21455 (K4A81_20820) - 4185374..4185940 (-) 567 Protein_4083 endonuclease/exonuclease/phosphatase family protein -
  K4A81_RS20825 (K4A81_20825) - 4185937..4186494 (-) 558 WP_222885051.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  K4A81_RS20830 (K4A81_20830) - 4186491..4187072 (-) 582 WP_222885052.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  K4A81_RS20835 (K4A81_20835) rpsR 4187263..4187502 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  K4A81_RS20840 (K4A81_20840) ssbA 4187546..4188064 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  K4A81_RS20845 (K4A81_20845) rpsF 4188104..4188391 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  K4A81_RS20850 (K4A81_20850) ychF 4188503..4189603 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  K4A81_RS20855 (K4A81_20855) - 4189730..4191733 (-) 2004 WP_121984318.1 molybdopterin-dependent oxidoreductase -
  K4A81_RS20860 (K4A81_20860) - 4191780..4191986 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=600594 K4A81_RS20840 WP_004392979.1 4187546..4188064(-) (ssbA) [Bacillus velezensis strain BIM B-454D]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=600594 K4A81_RS20840 WP_004392979.1 4187546..4188064(-) (ssbA) [Bacillus velezensis strain BIM B-454D]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378