Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6751_RS03490 Genome accession   NZ_CP082244
Coordinates   726339..726833 (+) Length   164 a.a.
NCBI ID   WP_044411072.1    Uniprot ID   A0A0D6S8T0
Organism   Metapseudomonas otitidis strain CSMC7.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 721339..731833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6751_RS03480 (K6751_03480) uvrA 721891..724725 (-) 2835 WP_222900884.1 excinuclease ABC subunit UvrA -
  K6751_RS03485 (K6751_03485) - 724935..726329 (+) 1395 WP_044411068.1 MFS transporter -
  K6751_RS03490 (K6751_03490) ssb 726339..726833 (+) 495 WP_044411072.1 single-stranded DNA-binding protein Machinery gene
  K6751_RS03495 (K6751_03495) - 727081..728412 (+) 1332 WP_160158610.1 hypothetical protein -
  K6751_RS03500 (K6751_03500) - 728400..729611 (-) 1212 WP_222900885.1 PepSY-associated TM helix domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18210.11 Da        Isoelectric Point: 5.3027

>NTDB_id=600496 K6751_RS03490 WP_044411072.1 726339..726833(+) (ssb) [Metapseudomonas otitidis strain CSMC7.1]
MARGVNKVILVGNVGGDPEVRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGQMQLLGGRPGSDGDSAPRAPRPQREPQQSAPRESRPAPQPAAQPAPDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=600496 K6751_RS03490 WP_044411072.1 726339..726833(+) (ssb) [Metapseudomonas otitidis strain CSMC7.1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCAACGTCGGCGGCGACCCTGAAGTCCGCTACATGCCCAACGGCAA
CGCCGTGACCAACATCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGCACCGAGT
GGCACCGCGTGGTGTTCTTCGGCCGCCTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAG
GGCAGCCTGCGCACCCGCAAGTGGCAGGGTCAGGACGGCCAGGACCGCTACACCACCGAAATCGTCGTGGACATCAACGG
CCAGATGCAACTGCTCGGCGGCCGTCCCGGCAGCGATGGCGACTCCGCCCCGCGCGCCCCGCGTCCGCAGCGCGAGCCGC
AGCAGTCCGCCCCGCGCGAGTCCCGCCCGGCTCCGCAACCGGCCGCCCAGCCGGCCCCGGACTACGACAGCTTCGACGAC
GACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6S8T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.659

100

0.64
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.579
  ssb Neisseria meningitidis MC58

45.81

100

0.5
  ssb Neisseria gonorrhoeae MS11

45.81

100

0.5