Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   BAJP3042_RS17120 Genome accession   NZ_CP082243
Coordinates   3530692..3531855 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3525692..3536855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS17090 (BAJP3042_17090) - 3525957..3526376 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  BAJP3042_RS17095 (BAJP3042_17095) comFC 3526450..3527139 (-) 690 WP_222836125.1 phosphoribosyltransferase family protein Machinery gene
  BAJP3042_RS17100 (BAJP3042_17100) - 3527145..3527429 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAJP3042_RS17105 (BAJP3042_17105) comFA 3527487..3528872 (-) 1386 WP_222835405.1 DEAD/DEAH box helicase Machinery gene
  BAJP3042_RS17110 (BAJP3042_17110) - 3528980..3529828 (-) 849 WP_063094272.1 DegV family protein -
  BAJP3042_RS17115 (BAJP3042_17115) degU 3529926..3530615 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAJP3042_RS17120 (BAJP3042_17120) degS 3530692..3531855 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAJP3042_RS17125 (BAJP3042_17125) - 3532078..3532725 (+) 648 WP_003151384.1 YigZ family protein -
  BAJP3042_RS17130 (BAJP3042_17130) - 3532730..3533944 (+) 1215 WP_222835406.1 LCP family protein -
  BAJP3042_RS17135 (BAJP3042_17135) - 3534034..3535110 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  BAJP3042_RS17140 (BAJP3042_17140) - 3535243..3536439 (-) 1197 WP_222835407.1 glycosyltransferase -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=600479 BAJP3042_RS17120 WP_007407484.1 3530692..3531855(-) (degS) [Bacillus amyloliquefaciens strain JP3042]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=600479 BAJP3042_RS17120 WP_007407484.1 3530692..3531855(-) (degS) [Bacillus amyloliquefaciens strain JP3042]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACAGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAATGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
ATCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951