Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BAJP3042_RS17105 Genome accession   NZ_CP082243
Coordinates   3527487..3528872 (-) Length   461 a.a.
NCBI ID   WP_222835405.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3522487..3533872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS17070 (BAJP3042_17070) flgL 3522662..3523579 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  BAJP3042_RS17075 (BAJP3042_17075) flgK 3523591..3525108 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  BAJP3042_RS17080 (BAJP3042_17080) - 3525124..3525606 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BAJP3042_RS17085 (BAJP3042_17085) flgM 3525621..3525887 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAJP3042_RS17090 (BAJP3042_17090) - 3525957..3526376 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  BAJP3042_RS17095 (BAJP3042_17095) comFC 3526450..3527139 (-) 690 WP_222836125.1 phosphoribosyltransferase family protein Machinery gene
  BAJP3042_RS17100 (BAJP3042_17100) - 3527145..3527429 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAJP3042_RS17105 (BAJP3042_17105) comFA 3527487..3528872 (-) 1386 WP_222835405.1 DEAD/DEAH box helicase Machinery gene
  BAJP3042_RS17110 (BAJP3042_17110) - 3528980..3529828 (-) 849 WP_063094272.1 DegV family protein -
  BAJP3042_RS17115 (BAJP3042_17115) degU 3529926..3530615 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAJP3042_RS17120 (BAJP3042_17120) degS 3530692..3531855 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAJP3042_RS17125 (BAJP3042_17125) - 3532078..3532725 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52678.11 Da        Isoelectric Point: 10.1829

>NTDB_id=600477 BAJP3042_RS17105 WP_222835405.1 3527487..3528872(-) (comFA) [Bacillus amyloliquefaciens strain JP3042]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITDEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGIHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=600477 BAJP3042_RS17105 WP_222835405.1 3527487..3528872(-) (comFA) [Bacillus amyloliquefaciens strain JP3042]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTACGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGACGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTGTATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCATTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623