Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BAJP3042_RS17115 Genome accession   NZ_CP082243
Coordinates   3529926..3530615 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3524926..3535615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS17080 (BAJP3042_17080) - 3525124..3525606 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BAJP3042_RS17085 (BAJP3042_17085) flgM 3525621..3525887 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAJP3042_RS17090 (BAJP3042_17090) - 3525957..3526376 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  BAJP3042_RS17095 (BAJP3042_17095) comFC 3526450..3527139 (-) 690 WP_222836125.1 phosphoribosyltransferase family protein Machinery gene
  BAJP3042_RS17100 (BAJP3042_17100) - 3527145..3527429 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAJP3042_RS17105 (BAJP3042_17105) comFA 3527487..3528872 (-) 1386 WP_222835405.1 DEAD/DEAH box helicase Machinery gene
  BAJP3042_RS17110 (BAJP3042_17110) - 3528980..3529828 (-) 849 WP_063094272.1 DegV family protein -
  BAJP3042_RS17115 (BAJP3042_17115) degU 3529926..3530615 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAJP3042_RS17120 (BAJP3042_17120) degS 3530692..3531855 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAJP3042_RS17125 (BAJP3042_17125) - 3532078..3532725 (+) 648 WP_003151384.1 YigZ family protein -
  BAJP3042_RS17130 (BAJP3042_17130) - 3532730..3533944 (+) 1215 WP_222835406.1 LCP family protein -
  BAJP3042_RS17135 (BAJP3042_17135) - 3534034..3535110 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=600478 BAJP3042_RS17115 WP_003219701.1 3529926..3530615(-) (degU) [Bacillus amyloliquefaciens strain JP3042]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=600478 BAJP3042_RS17115 WP_003219701.1 3529926..3530615(-) (degU) [Bacillus amyloliquefaciens strain JP3042]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1