Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BAJP3042_RS05325 Genome accession   NZ_CP082243
Coordinates   1065999..1066577 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1060999..1071577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS20070 - 1061501..1062016 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  BAJP3042_RS20075 - 1062308..1062895 (-) 588 Protein_988 protoglobin domain-containing protein -
  BAJP3042_RS05310 (BAJP3042_05310) - 1062914..1064437 (-) 1524 WP_063095730.1 FAD-dependent oxidoreductase -
  BAJP3042_RS05315 (BAJP3042_05315) - 1064562..1065419 (+) 858 WP_015239527.1 SDR family oxidoreductase -
  BAJP3042_RS05320 (BAJP3042_05320) - 1065450..1065683 (-) 234 WP_025284522.1 IDEAL domain-containing protein -
  BAJP3042_RS05325 (BAJP3042_05325) comK 1065999..1066577 (+) 579 WP_003155179.1 competence protein ComK Regulator
  BAJP3042_RS05330 (BAJP3042_05330) - 1066723..1067091 (+) 369 WP_012117235.1 iron chaperone -
  BAJP3042_RS05335 (BAJP3042_05335) - 1067118..1067489 (+) 372 WP_222835823.1 iron chaperone -
  BAJP3042_RS05340 (BAJP3042_05340) - 1067612..1068121 (+) 510 WP_012117237.1 MepB family protein -
  BAJP3042_RS05345 (BAJP3042_05345) - 1068350..1069060 (-) 711 WP_222836092.1 YrpD family protein -
  BAJP3042_RS05350 (BAJP3042_05350) - 1069256..1069525 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  BAJP3042_RS05355 (BAJP3042_05355) - 1069557..1069874 (-) 318 WP_003155166.1 YbjQ family protein -
  BAJP3042_RS05360 (BAJP3042_05360) - 1069916..1071385 (-) 1470 WP_222835824.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=600429 BAJP3042_RS05325 WP_003155179.1 1065999..1066577(+) (comK) [Bacillus amyloliquefaciens strain JP3042]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=600429 BAJP3042_RS05325 WP_003155179.1 1065999..1066577(+) (comK) [Bacillus amyloliquefaciens strain JP3042]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATCTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823