Detailed information NTG0600352

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: K5Y35_RS11825
• Genome accession: NZ_CP082236
• Coordinates: 2653809..2655155 (-)
• Length: 448 a.a.
• NCBI ID: WP_222834275.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SC3(2021)
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2648809..2660155

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5Y35_RS11810	-	2649037..2652120 (+)	3084	WP_222834273.1	pilus assembly protein	-
K5Y35_RS11815	-	2652136..2652537 (+)	402	WP_222834274.1	type IV pilin protein	-
K5Y35_RS11820	thiO	2652595..2653695 (+)	1101	WP_123464037.1	glycine oxidase ThiO	-
K5Y35_RS11825	pilR	2653809..2655155 (-)	1347	WP_222834275.1	sigma-54-dependent transcriptional regulator	Regulator
K5Y35_RS11830	pilS	2655152..2656741 (-)	1590	WP_222834276.1	sensor histidine kinase	Regulator
K5Y35_RS11835	-	2656731..2656973 (-)	243	WP_128616134.1	PP0621 family protein	-
K5Y35_RS11840	-	2657101..2658117 (-)	1017	WP_123464044.1	outer membrane protein assembly factor BamD	-
K5Y35_RS11845	rluD	2658269..2659231 (+)	963	WP_123464046.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
K5Y35_RS11850	pgeF	2659228..2659950 (+)	723	WP_123464048.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50119.54 Da
• Isoelectric Point: 6.9010

>NTDB_id=600352 K5Y35_RS11825 WP_222834275.1 2653809..2655155(-) (pilR) [Pseudomonas sp. SC3(2021)]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLQRQPFDLCLTDMRLPDGTGLDLVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPVAGGVCTSIDRRLLGDSSPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAELAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
AHMLKRLAKDTGQPPARLHPQALETLKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAAGGAIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=600352 K5Y35_RS11825 WP_222834275.1 2653809..2655155(-) (pilR) [Pseudomonas sp. SC3(2021)]
TTGAACACGAGCCCACGGCAAAAGATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCGCGTAATCTCGGCGAAGCCCAGGCCCTGCTGCAGCGCCAGCCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGATCTGGTACAACACATTCAGCAACGTTATCCACAGCTGCCG
GTGGCGATGATCACCGCGTATGGCAGCCTCGAAACCGCAATCAACGCGCTGAAGGCCGGGGCTTTTGACTTTCTGACCAA
ACCGGTGGACCTCACCCGCCTGCGTGAACTGGTCGGCACCGCCTTGCGCATGCCGGTGGCCGGTGGCGTGTGCACCTCGA
TTGACCGGCGCTTGCTCGGCGACTCGTCGCCCATGCGCAATCTGCGCAAACAGATCGACAAACTCGCCCGCAGCCAGGCG
CCGGTGTACATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGGCTGATCCACGAACAAGGCCCGCGCGCCAG
CCAGCCCTTCGTGCCGGTGAACTGCGGGGCCATTCCTTCGGAATTGATGGAGAGTGAATTCTTCGGTCACCGCAAAGGCA
GTTTTACCGGTGCGGTCGAGGACAAGCCCGGACTGTTCCAGGCAGCTCACGGCGGCACATTGTTTCTCGATGAAGTGGCG
GACCTGCCGCTGTCCATGCAAGTGAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGTGGCCAACAGGA
AACCGTGGTCGATGTGCGTATTCTGTGCGCCACCCACAAGGATCTGGACGCCGAATTGGCTGCCGAACGCTTTCGTCAGG
ATCTGTATTACCGGCTTAACGTCATCGAATTGCGCGTACCGTCCTTGCGCGAACGACGCGATGACATTGAAGTGCTGGCG
GCGCACATGCTCAAGCGCCTGGCCAAGGACACCGGCCAACCGCCGGCGCGCCTGCACCCGCAAGCGCTGGAAACCCTGAA
GAACTACCGCTTTCCAGGGAATGTACGCGAGCTGGAAAACGTCCTCGAACGGGCGCACACCTTGTGTGAAAACCGGACGA
TCGAAGCTGAGGACTTGCGCCTGAGCGAGGGTAACTGCGCAGCGGGTGGCGCAATTGCCGACCTGACGCAAATCGACAAC
CTGGAAGATTATCTGGAGAACGTCGAACGCAAGTTGATCCTGCAGGCGCTGGAGGAGACGCGCTGGAATCGCACGGCAGC
GGCGCAGCGCTTGAGCCTGTCGTTTCGGTCGATGCGTTACAGGTTGAAGAAACTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.458	98.884	0.786
pilR	Acinetobacter baumannii strain A118	49.455	100	0.507
luxO	Vibrio cholerae strain A1552	39.563	91.964	0.364