Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   K5Y35_RS11830 Genome accession   NZ_CP082236
Coordinates   2655152..2656741 (-) Length   529 a.a.
NCBI ID   WP_222834276.1    Uniprot ID   -
Organism   Pseudomonas sp. SC3(2021)     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2650152..2661741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5Y35_RS11815 - 2652136..2652537 (+) 402 WP_222834274.1 type IV pilin protein -
  K5Y35_RS11820 thiO 2652595..2653695 (+) 1101 WP_123464037.1 glycine oxidase ThiO -
  K5Y35_RS11825 pilR 2653809..2655155 (-) 1347 WP_222834275.1 sigma-54-dependent transcriptional regulator Regulator
  K5Y35_RS11830 pilS 2655152..2656741 (-) 1590 WP_222834276.1 sensor histidine kinase Regulator
  K5Y35_RS11835 - 2656731..2656973 (-) 243 WP_128616134.1 PP0621 family protein -
  K5Y35_RS11840 - 2657101..2658117 (-) 1017 WP_123464044.1 outer membrane protein assembly factor BamD -
  K5Y35_RS11845 rluD 2658269..2659231 (+) 963 WP_123464046.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K5Y35_RS11850 pgeF 2659228..2659950 (+) 723 WP_123464048.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58516.31 Da        Isoelectric Point: 7.0066

>NTDB_id=600353 K5Y35_RS11830 WP_222834276.1 2655152..2656741(-) (pilS) [Pseudomonas sp. SC3(2021)]
MIAEAASAHSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLVLNILLVVFFENTRRPTQLF
TLALVDVLLLCALFYAAGGVVSALGNLLIVSIAISNTLLRRRIGLLIAAIGALGIVGLSFLLSFSHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAERRASEVVGLEALNALILQRMRTGILVLDGARRVQLANHSAQILLAQSHLQGHLID
DYSPALVDRLQLWMNNPTLRPQSLKIPGNGLELQASFIALDQSPNPQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLGESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQATER
QQIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHEQAEVWLALFVDPDSQLAVLEVRDNGPGVALDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQDGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=600353 K5Y35_RS11830 WP_222834276.1 2655152..2656741(-) (pilS) [Pseudomonas sp. SC3(2021)]
GTGATCGCTGAGGCCGCCAGCGCCCACAGCAAACAGGCGCAGCGCCTGCTGCGCCTCTACCATCTCTACCGTTTAAGCGT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAACCGCCTGCTGACCTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGCTGGCTGTATCTGGTGCTCAACATTCTGTTGGTGGTGTTCTTTGAAAACACCCGGCGCCCGACTCAGCTGTTC
ACGCTGGCGCTGGTCGACGTGCTGTTGTTGTGCGCTTTGTTCTACGCGGCCGGCGGCGTGGTCAGTGCCCTGGGCAATCT
GCTGATCGTTTCGATCGCGATCAGCAATACCCTGCTGCGGCGGCGTATCGGCCTGCTGATCGCCGCCATTGGCGCGCTCG
GCATTGTCGGCCTGAGTTTCCTGCTCAGCTTCAGCCATCCCCTGAGCGCCAATGAATACCTGCAGGCCGGCACCCTCGGT
GCGCTGTGTTTCGCCGCCTCACTGCTGGTGCAAGGATTGATCAGGCGTCTGGAGGTCAGTGAAACCCTGGCCGAACGCCG
CGCCAGCGAAGTGGTCGGTCTCGAAGCGCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
GAGCGCGCCGGGTGCAACTGGCCAACCACAGCGCGCAGATCCTGCTCGCGCAATCCCATCTTCAAGGGCATCTGATCGAC
GACTATTCGCCGGCACTGGTCGATCGCCTGCAATTGTGGATGAACAACCCGACCCTGCGCCCGCAAAGCCTGAAAATCCC
CGGCAACGGCCTCGAACTGCAAGCCAGCTTCATCGCCCTGGACCAGAGCCCGAACCCACAGACCCTGGTGTTTCTCGAAG
ACCTCGCGCAAATCGCCCAGCAGGCCCAGCAACTAAAACTGGCCGCCCTCGGCCGCCTGACCGCCGGCATCTCCCACGAA
ATCCGCAATCCGCTGGGCGCCATCAGTCATGCCGCGCAGCTATTGGGGGAATCCGAGGAACTCGATGGTGCAGATCGCCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGTGCACCGCAACGCCTGGATCTCAAGCCGTGGCTGGAAAACTTCGTTGCCGAAAGCCGCGAGCAGGCCACTGAGCGT
CAGCAGATTCACTTACGGATCAATTCGGGGGACTTCACCACCCTGATGGACCCCAACCAGCTCACGCAAATTCTCGACAA
TCTGTTGCGCAACGGCTGGCGCCACAGCGCCCTGCTGCACGAACAGGCCGAGGTCTGGCTGGCCCTGTTCGTCGACCCCG
ACAGCCAGTTGGCGGTGCTCGAAGTACGGGACAACGGCCCCGGCGTCGCGCTCGATCAACAGGCACATCTGTTCGAACCG
TTCTTCACCACCAGTAGCCAGGGCACCGGCCTTGGGCTGTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCGCGCCT
AGACTTCCAGTCACGCCAAGACGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

58.868

100

0.59