Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6980_RS04185 Genome accession   NZ_CP082217
Coordinates   1022901..1023959 (+) Length   352 a.a.
NCBI ID   WP_104602515.1    Uniprot ID   -
Organism   Xanthomonas cucurbitae strain KS_456     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1017901..1028959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6980_RS04170 (K6980_04155) - 1017905..1019194 (+) 1290 WP_104539991.1 citrate synthase -
  K6980_RS04175 (K6980_04160) - 1019368..1020015 (-) 648 WP_104602517.1 hypothetical protein -
  K6980_RS04180 (K6980_04165) - 1020260..1022782 (-) 2523 WP_104602516.1 penicillin-binding protein 1A -
  K6980_RS04185 (K6980_04170) comM 1022901..1023959 (+) 1059 WP_104602515.1 pilus assembly protein PilM Machinery gene
  K6980_RS04190 (K6980_04175) - 1023959..1024696 (+) 738 WP_104602514.1 PilN domain-containing protein -
  K6980_RS04195 (K6980_04180) - 1024693..1025358 (+) 666 WP_104602513.1 type 4a pilus biogenesis protein PilO -
  K6980_RS04200 (K6980_04185) - 1025355..1025888 (+) 534 WP_104602512.1 pilus assembly protein PilP -
  K6980_RS04205 (K6980_04190) - 1025908..1027872 (+) 1965 WP_104602511.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37664.25 Da        Isoelectric Point: 4.3924

>NTDB_id=600258 K6980_RS04185 WP_104602515.1 1022901..1023959(+) (comM) [Xanthomonas cucurbitae strain KS_456]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKARNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVSSELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=600258 K6980_RS04185 WP_104602515.1 1022901..1023959(+) (comM) [Xanthomonas cucurbitae strain KS_456]
GTGGGGCTTCTACCCAAGAGTCAGTCGCCACTGATCGGTGTCGATATCAGTTCCACTGCGGTCAAGCTGTTGCAGCTGTC
GCGCAGCGGGAACCGTTTCCGCGTGGAACACTACGCGGTGGAACCATTGCCGCCGAATGCGGTGGTAGAAAAGAACATCG
TCGAAGTGGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAGGAACGCGGCGGCGGCC
GTGGCCGGCTCGGCGGTCATCACCAAGCTGATCCCGATGCCCGCCGACCTGGACGACAGCGATCTGGAAGCGCAGGTCGA
GCTGGAGGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCCGCTTCGCGCTCGGAGAACGTGGAGCTGCGCCAGTCGGCGCTGGAACTGGGC
GGCCTGGTCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTTTCCAGCGAACTGCCGGT
GGCAGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGCTCCGGCCGTAGCC
TGTACAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTATGGCCTGACCTACGAAGAG
GCCGGCCTGGCCAAGCGCCAGGGTGGCTTGCCGGAAAGCTACGAGGTCGAGGTGCTTGAGCCGTTCAAGGAGGCGACTGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAATTCAATCGCGTGGACTGCATCGTGCTGGCCGGCG
GCTGCGCTGCGCTGTCGCGCCTGCCGGAGATGGTCGAAGAACAGCTGGGGGTGACCACCGTGGTGGCCAACCCGCTCGCA
CAGATGACGCTGGGTCCCAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCCGCCCTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.712

99.716

0.506
  pilM Legionella pneumophila strain ERS1305867

46.724

99.716

0.466