Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K6982_RS14225 Genome accession   NZ_CP082215
Coordinates   3325002..3326393 (+) Length   463 a.a.
NCBI ID   WP_167526932.1    Uniprot ID   -
Organism   Xanthomonas cucurbitae strain MI_359     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3320002..3331393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6982_RS14205 (K6982_14135) - 3320248..3320640 (-) 393 WP_167526931.1 endonuclease domain-containing protein -
  K6982_RS14210 (K6982_14140) sucD 3320925..3321800 (-) 876 WP_104604276.1 succinate--CoA ligase subunit alpha -
  K6982_RS14215 (K6982_14145) sucC 3321825..3322994 (-) 1170 WP_104604278.1 ADP-forming succinate--CoA ligase subunit beta -
  K6982_RS14220 (K6982_14150) - 3323229..3324842 (+) 1614 WP_104604280.1 HAMP domain-containing sensor histidine kinase -
  K6982_RS14225 (K6982_14155) pilR 3325002..3326393 (+) 1392 WP_167526932.1 sigma-54 dependent transcriptional regulator Regulator
  K6982_RS14230 (K6982_14160) pilB 3327214..3328950 (-) 1737 WP_159407403.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K6982_RS14235 (K6982_14165) pilA/pilAI 3329076..3329483 (-) 408 WP_159407404.1 pilin Machinery gene
  K6982_RS14240 (K6982_14170) pilC 3329837..3331090 (+) 1254 WP_159407405.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 50167.66 Da        Isoelectric Point: 6.5834

>NTDB_id=600251 K6982_RS14225 WP_167526932.1 3325002..3326393(+) (pilR) [Xanthomonas cucurbitae strain MI_359]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEISKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGASTAMESLRATIAKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAPGPFIPVNCGAIPTELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGNLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTPSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGRLATGPGTAII
EPREAVVDIDPTSAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=600251 K6982_RS14225 WP_167526932.1 3325002..3326393(+) (pilR) [Xanthomonas cucurbitae strain MI_359]
ATGAACGAACCGAAAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTTGTTCTCACCCTGGGGCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAATCTGGCCGAAGCGCGCGAACTGCTGGCCAGCAACCCCTACGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCTCCAAGCATTACCCGCAGACACCGGTGGCG
ATGATTACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCTTTCGACTTCGTCAGCAAGCCCGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCCCCGGCGCCGC
CGCCGGAGCAGGCCAGCCGCCTGCTCGGCGCCTCCACCGCGATGGAGAGCCTGCGCGCCACCATCGCCAAGGTCGCACGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAACTGGTGGCGCGCACCATCCACGAGCAGGGCGC
ACGCGCCCCCGGGCCGTTCATTCCGGTCAATTGCGGCGCCATTCCCACCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCACATGCCGACAAGCCCGGCCTGTTCCAGGCCGCACATGGCGGCACCCTGTTCCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTATTGCGCGCGATCCAGGAAAAATCGGTACGCCCGGTTGGCGC
CTCCAGCGAATCGCTGGTCGATGTGCGCATCCTTTCGGCCACGCACAAGGACCTGGGCAACCTGGTCTCCGATGGCCGTT
TTCGGCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGGGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCTGCCATCATCGCGCGGCTGGCGCACAGCCATGGGCGGCCGATCCCGCTCTTGACGCCTTCGGCCCTGGA
CGCGCTGGACCAATACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCTCACGGCGGCCGCCTGGCAACCGGCCCCGGCACGGCCATCATC
GAACCGCGCGAAGCGGTGGTCGACATCGACCCCACCTCGGCCGCCCTGCCCTCCTACATCGAACAGCTCGAACGCGCCGC
AATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCCGGACCGCCGCCCAACTGGGCATCACGTTTCGCGCGCTGC
GTTACAAGCTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.181

99.136

0.626
  pilR Acinetobacter baumannii strain A118

49.567

99.784

0.495