Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6982_RS12565 Genome accession   NZ_CP082215
Coordinates   2940330..2940869 (-) Length   179 a.a.
NCBI ID   WP_104605359.1    Uniprot ID   -
Organism   Xanthomonas cucurbitae strain MI_359     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2935330..2945869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6982_RS12535 (K6982_12490) - 2935654..2937174 (+) 1521 WP_337999792.1 diguanylate cyclase -
  K6982_RS12540 (K6982_12495) - 2937707..2937886 (-) 180 Protein_2458 IS30 family transposase -
  K6982_RS12545 (K6982_12500) - 2937916..2938224 (-) 309 WP_146090343.1 hypothetical protein -
  K6982_RS12550 (K6982_12505) - 2938300..2939250 (-) 951 WP_104604448.1 HipA domain-containing protein -
  K6982_RS12555 (K6982_12510) - 2939247..2939450 (-) 204 WP_249027661.1 helix-turn-helix transcriptional regulator -
  K6982_RS12560 (K6982_12515) - 2939651..2939971 (+) 321 WP_159407303.1 hypothetical protein -
  K6982_RS12565 (K6982_12520) ssb 2940330..2940869 (-) 540 WP_104605359.1 single-stranded DNA-binding protein Machinery gene
  K6982_RS12570 (K6982_12525) - 2941142..2942140 (+) 999 WP_159407304.1 polyprenyl synthetase family protein -
  K6982_RS12575 (K6982_12530) - 2942338..2943138 (-) 801 WP_104605355.1 dienelactone hydrolase family protein -
  K6982_RS12580 (K6982_12535) murD 2943308..2944714 (-) 1407 WP_159407305.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19109.97 Da        Isoelectric Point: 5.3095

>NTDB_id=600246 K6982_RS12565 WP_104605359.1 2940330..2940869(-) (ssb) [Xanthomonas cucurbitae strain MI_359]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSQAPRQQGGGGGGQGGGYGGGGGGQDYAPRRQQP
AQQQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=600246 K6982_RS12565 WP_104605359.1 2940330..2940869(-) (ssb) [Xanthomonas cucurbitae strain MI_359]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAACAACCAGGAGCGCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGTTGGGCGAGATCGCCGGCGAATACCTGCGCAAGGGCTCGCAGGTCTACGTCGAAGGG
GAACTGCGCTACGACAAGTACACCGGTCAGGATGGCGTGGAGAAGTACAGCACCGATATCGTCGCCAACGAAATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGCATGGGCGGCGACCGTCCGCAGCGCTCGCAGGCTCCGCGCCAGCAGG
GCGGTGGCGGTGGCGGCCAGGGCGGCGGCTACGGTGGTGGCGGCGGTGGTCAGGACTATGCCCCGCGTCGTCAGCAGCCG
GCGCAGCAGCAGTCGGCTCCGCCGATGGACGACTTTGCCGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.026

100

0.48
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.464
  ssb Neisseria meningitidis MC58

44.751

100

0.453
  ssb Neisseria gonorrhoeae MS11

44.751

100

0.453