Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K6981_RS14935 Genome accession   NZ_CP082213
Coordinates   3382989..3384380 (+) Length   463 a.a.
NCBI ID   WP_170066996.1    Uniprot ID   -
Organism   Xanthomonas cucurbitae strain WI_206     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3378575..3389000 3382989..3384380 within 0


Gene organization within MGE regions


Location: 3378575..3389000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6981_RS14915 (K6981_14860) - 3378575..3378793 (+) 219 WP_274396441.1 hypothetical protein -
  K6981_RS14920 (K6981_14865) sucD 3378911..3379786 (-) 876 WP_104604276.1 succinate--CoA ligase subunit alpha -
  K6981_RS14925 (K6981_14870) sucC 3379811..3380980 (-) 1170 WP_274396442.1 ADP-forming succinate--CoA ligase subunit beta -
  K6981_RS14930 (K6981_14875) - 3381216..3382829 (+) 1614 WP_104604280.1 HAMP domain-containing sensor histidine kinase -
  K6981_RS14935 (K6981_14880) pilR 3382989..3384380 (+) 1392 WP_170066996.1 sigma-54 dependent transcriptional regulator Regulator
  K6981_RS14940 (K6981_14885) pilB 3385017..3386726 (-) 1710 WP_274397236.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K6981_RS14945 (K6981_14890) pilA2 3386969..3387388 (-) 420 WP_274396444.1 pilin Machinery gene
  K6981_RS14950 (K6981_14895) pilC 3387741..3389000 (+) 1260 WP_274396445.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 50088.56 Da        Isoelectric Point: 6.5127

>NTDB_id=600217 K6981_RS14935 WP_170066996.1 3382989..3384380(+) (pilR) [Xanthomonas cucurbitae strain WI_206]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEISKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGASTAMESLRATIAKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAANGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGNLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTPSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGRLATGPGTAII
EPREAVVDIDPTSAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=600217 K6981_RS14935 WP_170066996.1 3382989..3384380(+) (pilR) [Xanthomonas cucurbitae strain WI_206]
ATGAACGAACCGAAAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTTGTTCTCACCCTGGGGCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAATCTGGCCGAAGCGCGCGAACTGCTGGCCAGCAACCCCTACGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCTCCAAGCATTACCCGCAGACACCGGTGGCG
ATGATTACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCCGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCCCCGGCGCCGC
CGCCGGAGCAGGCCAGCCGCCTGCTCGGCGCCTCCACCGCGATGGAGAGCCTGCGCGCCACCATCGCCAAGGTCGCACGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAACTGGTGGCGCGCACCATCCACGAACAGGGCGC
GCGCGCCGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCACATGCCGACAAGCCCGGCCTGTTCCAGGCCGCAAATGGCGGCACCCTGTTCCTGGAC
GAAGTAGCCGAGCTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGTGCCATCCAGGAAAAGTCGGTACGCCCGGTCGGCGC
CTCCAGCGAATCGCTGGTCGATGTGCGCATCCTTTCGGCCACGCACAAGGACCTGGGCAACCTGGTTTCCGACGGCCGCT
TCCGGCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCGGCCGCCATCATCGCGCGGCTCGCGCACAGCCACGGGCGGCCGATCCCGCTCTTGACGCCTTCGGCCCTGGA
CGCGCTGGACCAATACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCTCACGGCGGCCGCCTGGCAACCGGCCCCGGCACGGCCATCATC
GAACCGCGCGAAGCGGTGGTCGACATCGACCCCACCTCGGCCGCCCTGCCCTCCTACATCGAACAGCTCGAACGCGCCGC
AATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCCGGACCGCCGCCCAACTGGGCATCACGTTTCGCGCGCTGC
GTTACAAGCTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.181

99.136

0.626
  pilR Acinetobacter baumannii strain A118

49.134

99.784

0.49