Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   NDK36_RS14275 Genome accession   NZ_CP098491
Coordinates   2629134..2629829 (-) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis strain NB205     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2624134..2634829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS14250 (NDK36_14250) minD 2625070..2625876 (-) 807 WP_014480454.1 septum site-determining protein MinD -
  NDK36_RS14255 (NDK36_14255) minC 2625878..2626558 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  NDK36_RS14260 (NDK36_14260) mreD 2626611..2627129 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  NDK36_RS14265 (NDK36_14265) mreC 2627126..2627998 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  NDK36_RS14270 (NDK36_14270) mreB 2628029..2629042 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  NDK36_RS14275 (NDK36_14275) ysxA/radC 2629134..2629829 (-) 696 WP_014480455.1 DNA repair protein RadC Machinery gene
  NDK36_RS14280 (NDK36_14280) maf 2629866..2630435 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  NDK36_RS14285 (NDK36_14285) spoIIB 2630588..2631586 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  NDK36_RS14290 (NDK36_14290) comC 2631720..2632466 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  NDK36_RS14295 (NDK36_14295) folC 2632606..2633898 (-) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=600113 NDK36_RS14275 WP_014480455.1 2629134..2629829(-) (ysxA/radC) [Bacillus subtilis strain NB205]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=600113 NDK36_RS14275 WP_014480455.1 2629134..2629829(-) (ysxA/radC) [Bacillus subtilis strain NB205]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424